View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11508_high_8 (Length: 248)

Name: NF11508_high_8
Description: NF11508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11508_high_8
NF11508_high_8
[»] chr3 (3 HSPs)
chr3 (3-95)||(1829694-1829786)
chr3 (99-227)||(1829240-1829373)
chr3 (120-180)||(51039754-51039814)
[»] chr7 (3 HSPs)
chr7 (119-180)||(33922787-33922848)
chr7 (136-181)||(35567129-35567174)
chr7 (128-180)||(34681699-34681751)
[»] chr1 (2 HSPs)
chr1 (117-181)||(44442246-44442310)
chr1 (136-180)||(26857238-26857282)
[»] scaffold0219 (1 HSPs)
scaffold0219 (119-181)||(21306-21368)
[»] chr4 (2 HSPs)
chr4 (117-175)||(19597202-19597260)
chr4 (116-181)||(51105917-51105982)
[»] chr8 (2 HSPs)
chr8 (117-230)||(12639926-12640043)
chr8 (141-181)||(42022639-42022679)
[»] chr6 (1 HSPs)
chr6 (141-181)||(12307845-12307885)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 1829786 - 1829694
Alignment:
Q  3 ggattaaggtgagttttgaatagtggttaaccttcgggttttcaagtaaaaaagatcctgtcaaaagataaataaaattcgactaagaatctt 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  1829786 ggattaaggtgagttttgaatagtggttaaccttcgggttttcaagtaaaaaggatccggtcaaaagataaataaaattcgactaagaatctt 1829694  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 1829373 - 1829240
Alignment:
Q  99 aacgaaggtctctcaaatactttttaaatattctaagttagtaaattattttttaaaaatgtcaaatagtttaattttcaat----agaatacacaagtt 194  Q
    ||||| || |||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     |||||||||| ||    
T  1829373 aacgagggcctctgaaacactttttaaatattctaagttagtaaattattttttaaaaatatcaaatagtttaattttcaatgtactgaatacacaaatt 1829274  T
Q  195 ttcgc-aaaagttactattttaaacccttaaaga 227  Q
    ||||| ||||||||| |||||||| |||||||||    
T  1829273 ttcgcaaaaagttaccattttaaatccttaaaga 1829240  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 51039754 - 51039814
Alignment:
Q  120 ttttaaatattctaagttagtaaattattttttaaaaatgtcaaatagtttaattttcaat 180  Q
    ||||||||||| ||| |||  |||||||| | |||||| ||||||||||| ||||||||||    
T  51039754 ttttaaatattttaaattaaaaaattattctataaaaaagtcaaatagttcaattttcaat 51039814  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 33922848 - 33922787
Alignment:
Q  119 tttttaaatattctaagttagtaaattattttttaaaaatgtcaaatagtttaattttcaat 180  Q
    |||||||  ||||||| |||| |||||||| |||||||| ||||||||||| ||||||||||    
T  33922848 tttttaagcattctaaattagaaaattattctttaaaaaagtcaaatagttcaattttcaat 33922787  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 35567129 - 35567174
Alignment:
Q  136 ttagtaaattattttttaaaaatgtcaaatagtttaattttcaata 181  Q
    |||| ||||||||||||||||| |||||||| |||||||| |||||    
T  35567129 ttagaaaattattttttaaaaaagtcaaatattttaatttccaata 35567174  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 34681699 - 34681751
Alignment:
Q  128 attctaagttagtaaattattttttaaaaatgtcaaatagtttaattttcaat 180  Q
    ||||||| |||| ||||||||||||| ||| ||||||||||| ||||| ||||    
T  34681699 attctaaattaggaaattattttttacaaaagtcaaatagttcaatttccaat 34681751  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 44442246 - 44442310
Alignment:
Q  117 actttttaaatattctaagttagtaaattattttttaaaaatgtcaaatagtttaattttcaata 181  Q
    ||||||||| |||| ||| |||| |||||||| |||||||| |||||||| || |||||||||||    
T  44442246 actttttaagtattttaaattaggaaattattctttaaaaaagtcaaatatttcaattttcaata 44442310  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 26857282 - 26857238
Alignment:
Q  136 ttagtaaattattttttaaaaatgtcaaatagtttaattttcaat 180  Q
    |||| |||||||| |||||||| || |||||||||||||||||||    
T  26857282 ttagaaaattattctttaaaaaagttaaatagtttaattttcaat 26857238  T

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Target: scaffold0219 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 21368 - 21306
Alignment:
Q  119 tttttaaatattctaagttagtaaattattttttaaaaatgtcaaatagtttaattttcaata 181  Q
    |||||||  ||||||| |||  |||||||||||||||||||| ||||| ||||||||| ||||    
T  21368 tttttaagaattctaaattaagaaattattttttaaaaatgttaaatattttaatttttaata 21306  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 19597260 - 19597202
Alignment:
Q  117 actttttaaatattctaagttagtaaattattttttaaaaatgtcaaatagtttaattt 175  Q
    |||||||||  ||||||  |||| |||||||| |||||||||||||||||||| |||||    
T  19597260 actttttaagcattctacattaggaaattattctttaaaaatgtcaaatagttcaattt 19597202  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 51105917 - 51105982
Alignment:
Q  116 tactttttaaatattctaagttagtaaattattttttaaaaatgtcaaatagtttaattttcaata 181  Q
    |||| ||||||||||||||  ||   ||||||| |||||||| |||||||| ||||||||||||||    
T  51105917 tactctttaaatattctaaaataaacaattattatttaaaaaagtcaaatattttaattttcaata 51105982  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 230
Target Start/End: Original strand, 12639926 - 12640043
Alignment:
Q  117 actttttaaatattctaagttagtaaattattttttaaaaatgtcaaatagtttaattttcaata----gaatacacaagttttcgcaaaagttactatt 212  Q
    |||||||||  ||||||| |||| |||||| || ||||||| || ||||| ||  |||||||| |    || ||||||| |||||  |||| |||||| |    
T  12639926 actttttaagcattctaaattaggaaattaattattaaaaaagttaaataattcgattttcaaaacattgattacacaacttttcataaaaattactact 12640025  T
Q  213 ttaaacccttaaagattg 230  Q
    ||||||||||||||||||    
T  12640026 ttaaacccttaaagattg 12640043  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 42022679 - 42022639
Alignment:
Q  141 aaattattttttaaaaatgtcaaatagtttaattttcaata 181  Q
    ||||||||||||||||| ||||||||||| ||||| |||||    
T  42022679 aaattattttttaaaaaagtcaaatagttcaatttccaata 42022639  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 12307845 - 12307885
Alignment:
Q  141 aaattattttttaaaaatgtcaaatagtttaattttcaata 181  Q
    |||||||||| |||||| |||||||| ||||||||||||||    
T  12307845 aaattattttataaaaaagtcaaatattttaattttcaata 12307885  T

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