View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11508_low_1 (Length: 861)
Name: NF11508_low_1
Description: NF11508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11508_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 475 - 846
Target Start/End: Complemental strand, 32365502 - 32365136
Alignment:
| Q |
475 |
tttactccccatcgtttttcttaaaccgtttcataacaatcgctgcctcaacactaaccctagatccgttcgcgttgtatgggatcacggcaccgccgcc |
574 |
Q |
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| T |
32365502 |
tttactccttatcgtttttcttaaaccgtttcataacaatcgctgcctcaacactaaccctagatccgttcgcgttgtatgggatcacggcaccgccgcc |
32365403 |
T |
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| Q |
575 |
accaccatcggtggcggaaatgataggcataaggttatggcatttgttggaattcaaactggatttagatctgttggaagacgtgaatctttgaggaaga |
674 |
Q |
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| T |
32365402 |
gccaccatcggtggcggaaattataggcataaggttatggcatttgttggaattcaaactggatttagatctgttggaagacgtcaatctttgaggaaca |
32365303 |
T |
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| Q |
675 |
cttggtttccttctgatcctaatggacttcaacggtactaatctcttttttgttgaggagatgaaaaatttatgatttctaacaaacatgttatcgtgtt |
774 |
Q |
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| T |
32365302 |
cttggtttccttccgatcctaatggacttcaacggtactaatctct-ttttcttgaggagatgaaaaatttatgatttct----atcttgttatcgtgtt |
32365208 |
T |
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| Q |
775 |
taattctatcaaattgttaatatccacgtacgttagagaaaaactgcttaggtgattttgacatgtagagag |
846 |
Q |
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| T |
32365207 |
taattctatcaaattgttaatatccacgtacgttagagaaaaactgcttaggtgattttgacatgtagagag |
32365136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 110 - 436
Target Start/End: Complemental strand, 32365890 - 32365541
Alignment:
| Q |
110 |
ccatcttcaatgcattaatgtcatttttgttaaagaatgaaggtgttgctgccgctgtagctgtcgtagtatagggtgggtgcatgcttattgtctaagc |
209 |
Q |
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| T |
32365890 |
ccatcttcaatgcattaatgtcatttttgttaaagaatgaaggtgttgctgccgctgtagctatcgtagtatagggtgggtgcatgcttattgtctaagc |
32365791 |
T |
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| Q |
210 |
aagca---------tacataactc-----cctccgtcaccacctttctcctcatcagttccactgtctctctcattcttcatttttacgataacaaataa |
295 |
Q |
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| T |
32365790 |
aagcaagcaaggcatacataactcaactccctccgtcaccacctttctcctcatcagttacactgtctctctcattcttcatttttacgataacaaataa |
32365691 |
T |
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| Q |
296 |
-taacaatgctatgatcacatgacccattcttcaa--------ccacaaccggaacttcttacagttccggtctaaactctaaacccctcacaatgcctt |
386 |
Q |
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| T |
32365690 |
ataacaatgctatgatcacatgacccattcttcaattcttcaaccacaaccggaacttcctacagttccggtctaaactctaaacccctcacaatgcctt |
32365591 |
T |
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| Q |
387 |
cattttccaaaccattcttcaaccaacgtcacaccattcctcttcgcaga |
436 |
Q |
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| T |
32365590 |
cattttccaaaccattcttcaaccaacgtcacaccattcctcttcgcaga |
32365541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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