View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11508_low_2 (Length: 428)
Name: NF11508_low_2
Description: NF11508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11508_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 9 - 409
Target Start/End: Original strand, 23204956 - 23205358
Alignment:
| Q |
9 |
ataatatacggatttacatacctaatgtcttaatattttgggtgaatgtgtgatatctttataccttgtgatatttctattccgttgtttctcccgtgac |
108 |
Q |
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| T |
23204956 |
ataatacacggatttacatagctaatgtcttaatattttggatgaatgtatgatatctttatatcttatgatatttctaatccgttgtttctcctgtgac |
23205055 |
T |
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| Q |
109 |
ctcgactcgccaacaacctaatttattttaaaaatgaatgagataataaaggctattttaatgcaatcagataaaggttggcaaagaaaaacctcatatc |
208 |
Q |
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| T |
23205056 |
cccgactctccaacaacctaattcattttaaaaatgaatgagataataaaggctattttaatgcaatcagataaaggttggcaaagaaaaacctcatatc |
23205155 |
T |
|
| Q |
209 |
gtggtgcaatggtgtctttcattttgcattaattcccaccggagctagctaggtaagagtctatgtgcagttgaatac--atacgtactgaacttatttg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
23205156 |
gtggtgcaatggtgtctttcattttgcattaattcccaccggagctagctaggtaagagtctatgtgcagttgaatacatatacgtattgaacttatttg |
23205255 |
T |
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| Q |
307 |
tcataatgtgctgtcttcactccgtttgatttcaatgaatgaatatgagtattatctatgcacatatatataagaggaaaacaaaaatcacaaacaagga |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23205256 |
tcataatgtgctgtcttcactccgtttgatttcaatgaatgaatatgagtattatctatgcacatatatataagaggaaaacaaaaatcacaaacaagga |
23205355 |
T |
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| Q |
407 |
acc |
409 |
Q |
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| T |
23205356 |
acc |
23205358 |
T |
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