View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11508_low_4 (Length: 351)

Name: NF11508_low_4
Description: NF11508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11508_low_4
NF11508_low_4
[»] chr5 (19 HSPs)
chr5 (14-335)||(9003636-9003955)
chr5 (112-326)||(8529208-8529422)
chr5 (113-312)||(1599935-1600134)
chr5 (112-326)||(8641651-8641865)
chr5 (165-324)||(8535825-8535984)
chr5 (112-317)||(9074356-9074561)
chr5 (112-326)||(2874118-2874335)
chr5 (112-326)||(2856508-2856725)
chr5 (112-326)||(2844681-2844898)
chr5 (117-310)||(8644485-8644687)
chr5 (114-308)||(2904642-2904839)
chr5 (117-310)||(8637140-8637342)
chr5 (189-307)||(8547750-8547864)
chr5 (117-312)||(8678087-8678292)
chr5 (26-63)||(1600181-1600218)
chr5 (187-308)||(3380803-3380924)
chr5 (26-63)||(9074604-9074641)
chr5 (28-63)||(8535691-8535726)
chr5 (31-63)||(8644405-8644437)
[»] chr4 (1 HSPs)
chr4 (112-326)||(9443369-9443583)
[»] chr7 (4 HSPs)
chr7 (112-324)||(48361475-48361687)
chr7 (187-326)||(35780159-35780298)
chr7 (25-63)||(48361733-48361771)
chr7 (26-63)||(35780016-35780053)
[»] chr1 (2 HSPs)
chr1 (102-324)||(5131028-5131250)
chr1 (267-323)||(26324131-26324187)
[»] scaffold0627 (2 HSPs)
scaffold0627 (187-305)||(5012-5130)
scaffold0627 (24-63)||(4833-4872)
[»] chr6 (1 HSPs)
chr6 (187-307)||(16716713-16716833)


Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 335
Target Start/End: Original strand, 9003636 - 9003955
Alignment:
Q  14 agagagaggatgagtcacaaatgtaaagaaatccccttaattctcccatgttgattctcctgtctgtaattccgtctacgattctaccattttgaaaaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003636 agagagaggatgagtcacaaatgtaaagaaatccccttaattctcccatgttgattctcctgtctgtaattccgtctacgattctaccattttgaaaaac 9003735  T
Q  114 atgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcacca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9003736 atgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcgcca 9003835  T
Q  214 ttcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtatctcaaggatcg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  9003836 ttcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttccca--gtgtgtatctcaaggatcg 9003933  T
Q  314 cacgctcaaacacaaagttatt 335  Q
    ||||||||||||||||||||||    
T  9003934 cacgctcaaacacaaagttatt 9003955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 112 - 326
Target Start/End: Original strand, 8529208 - 8529422
Alignment:
Q  112 acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcac 211  Q
    ||||||||||| |||||||| || || |||||||||||||| ||   ||||  |||||||||| ||||| ||   |||||||| ||||||||||||||||    
T  8529208 acatgtggaggagaaggaaacgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcac 8529307  T
Q  212 cattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtatctcaaggat 311  Q
    ||||||||||||| ||||| || |||||| ||| ||| | ||||||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||||    
T  8529308 cattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggat 8529407  T
Q  312 cgcacgctcaaacac 326  Q
    | |||||||||||||    
T  8529408 cacacgctcaaacac 8529422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 113 - 312
Target Start/End: Complemental strand, 1600134 - 1599935
Alignment:
Q  113 catgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcacc 212  Q
    |||||||||| |||||||| || || ||||||||| |||| |||  ||||  ||||||||||||||||  |   ||| |||| |||||||||||||||||    
T  1600134 catgtggaggagaaggaaatgactgcaacctctcactttcaaaacagaaaaccaatattgacatttgctcaccctcatatcttatccaatgaagtgcacc 1600035  T
Q  213 attcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtatctcaaggatc 312  Q
    |||||||||||| ||||  |||||  |||||| ||| | ||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||    
T  1600034 attcacacaagtgggattcttaagcatccaaaaagaaatttgaggatccacttcaacatttctccaggatggtgttccaagtgtgtttatctcaaggatc 1599935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 112 - 326
Target Start/End: Original strand, 8641651 - 8641865
Alignment:
Q  112 acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcac 211  Q
    ||||||||||| ||||||||  | |  || |||||| ||||||||  |||||| ||||||||| |||||      |||||| |||| ||||||||  |||    
T  8641651 acatgtggaggagaaggaaataacttcaatctctcactttccaaacagaaacataatattgacctttgctccccctcaaatttgattcaatgaagaacac 8641750  T
Q  212 cattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtatctcaaggat 311  Q
     |||||||||||| ||||| ||||||||| ||||||| |  |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  8641751 tattcacacaagtgggatacttaagactcgaaatagaaatctgaggatccacttcaacatttctccatgatggtgctccaagtgtgtttatctcaaggat 8641850  T
Q  312 cgcacgctcaaacac 326  Q
    | |||||||||||||    
T  8641851 cacacgctcaaacac 8641865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 165 - 324
Target Start/End: Original strand, 8535825 - 8535984
Alignment:
Q  165 caatattgacatttgcagaaaatcaaatctgatccaatgaagtgcaccattcacacaagtcggataattaagactccaaatagacagttgaggatccact 264  Q
    |||||||||| ||||||||  ||||||||| | |||||| |||||||||||||||||||| ||||| || |||||| ||| ||| | |||||||||||||    
T  8535825 caatattgacctttgcagaccatcaaatcttagccaatgtagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccact 8535924  T
Q  265 tcaacatttctccatgatggtgttcccagtgtgtgtatctcaaggatcgcacgctcaaac 324  Q
    |||||||||||||| ||||| ||||| ||||||| |||||||||| ||  ||||||||||    
T  8535925 tcaacatttctccaggatggggttccaagtgtgtttatctcaagggtcaaacgctcaaac 8535984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 112 - 317
Target Start/End: Complemental strand, 9074561 - 9074356
Alignment:
Q  112 acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcac 211  Q
    ||||| ||||| |||||||| || || ||||||||| |||| |||  |||| ||||||||||| ||||| ||   ||| |||| ||||||||||||||||    
T  9074561 acatgcggaggagaaggaaatgactgcaacctctcactttcaaaacagaaaaacaatattgacctttgctgattttcatatcttatccaatgaagtgcac 9074462  T
Q  212 cattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtatctcaaggat 311  Q
    ||||||||||||| ||||| |  |||||| ||| ||| | ||||||||||||||||||||||||| ||  || |||||| ||||||| ||||| ||||||    
T  9074461 cattcacacaagtgggatactcgagactcaaaaaagaaatttgaggatccacttcaacatttctcaatattgttgttccaagtgtgtttatctgaaggat 9074362  T
Q  312 cgcacg 317  Q
    | ||||    
T  9074361 cacacg 9074356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 326
Target Start/End: Complemental strand, 2874335 - 2874118
Alignment:
Q  112 acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaa---tcaaatctgatccaatgaagtg 208  Q
    ||||||||||| |||||||| || || ||||||||| |||| ||||||||||||||||||||| ||||  |  ||   |||||| | |||||||||||||    
T  2874335 acatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttgttgccaagcttcaaatataatccaatgaagtg 2874236  T
Q  209 caccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtatctcaag 308  Q
    | ||||||||||| || ||||    |||  || ||| ||| | ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||    
T  2874235 cgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatggtgttccgagcgtgtgtatctcgag 2874136  T
Q  309 gatcgcacgctcaaacac 326  Q
     |   |||||||||||||    
T  2874135 cactacacgctcaaacac 2874118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 112 - 326
Target Start/End: Complemental strand, 2856725 - 2856508
Alignment:
Q  112 acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaa---tcaaatctgatccaatgaagtg 208  Q
    ||||||||||| |||||||| || || ||||||||| |||| ||||||||||||||||||||| ||||  |  ||   |||||| | |||||||||||||    
T  2856725 acatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttgttgccaagcttcaaatataatccaatgaagtg 2856626  T
Q  209 caccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtatctcaag 308  Q
    | ||||||||||| || ||||    |||  || ||| ||| | |||||||||||||||||||||||||||||||| |||||| || ||||||||||| ||    
T  2856625 cgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatgatgttccgagcgtgtgtatctcgag 2856526  T
Q  309 gatcgcacgctcaaacac 326  Q
     |   |||||||||||||    
T  2856525 cactacacgctcaaacac 2856508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 112 - 326
Target Start/End: Complemental strand, 2844898 - 2844681
Alignment:
Q  112 acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaa---tcaaatctgatccaatgaagtg 208  Q
    ||||||||||| |||||||| || || ||||||||| |||| ||||||||||||||||||||| ||||  |       |||||| | |||||||||||||    
T  2844898 acatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttgttgccccgtttcaaatataatccaatgaagtg 2844799  T
Q  209 caccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtatctcaag 308  Q
    | ||||||||||| || ||||    |||  || ||| ||| | |||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||    
T  2844798 cgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacctttctccatgatggtgttccaagcgtgtgtatctcgag 2844699  T
Q  309 gatcgcacgctcaaacac 326  Q
     |   |||||||||||||    
T  2844698 cactacacgctcaaacac 2844681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 117 - 310
Target Start/End: Original strand, 8644485 - 8644687
Alignment:
Q  117 tggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcaccattc 216  Q
    |||||| |||||||| ||||| ||||||||| |||| |||  |||||||||||| ||| |||    |   |||||||||||||||||||| ||||||||     
T  8644485 tggaggagaaggaaatgattgcaacctctcactttcaaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccatta 8644584  T
Q  217 acacaagtcggataattaagactccaa---------atagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtatctcaa 307  Q
    ||| |||| ||||||| ||||||| ||         ||||| | ||||||||| |||||| |||||||||||||||||||||| ||||||| ||||||||    
T  8644585 acataagtgggataatgaagactcaaacctgatccaatagaaatttgaggatctacttcagcatttctccatgatggtgttccaagtgtgtttatctcaa 8644684  T
Q  308 gga 310  Q
    |||    
T  8644685 gga 8644687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 308
Target Start/End: Complemental strand, 2904839 - 2904642
Alignment:
Q  114 atgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatc---aaatctgatccaatgaagtgca 210  Q
    ||||||||| |||||||| ||||| | ||||||| |||| ||| ||||||||||||||||| ||||  ||  |||   || | |||||||||| | | |     
T  2904839 atgtggaggagaaggaaatgattgcatcctctcactttcaaaactgaaacacaatattgacttttgttgaccatcttcaactatgatccaatgtaatccg 2904740  T
Q  211 ccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtatctcaag 308  Q
    ||||||||||| || ||||    |||  || ||| ||| | ||||||||||||||||| |||||||||||||| |||||| || ||||||||||||||    
T  2904739 ccattcacacatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctccatgatgttgttccgagcgtgtgtatctcaag 2904642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 310
Target Start/End: Original strand, 8637140 - 8637342
Alignment:
Q  117 tggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcaccattc 216  Q
    |||||| |||||||| ||||| |||||||||||||| |||  |||||||||||| ||| |||   ||   | |||||||||||||||||  | |||||||    
T  8637140 tggaggagaaggaaatgattgcaacctctcattttctaaacagaaacacaatatagacctttcttgacccttaaatctgatccaatgaatcgtaccattc 8637239  T
Q  217 acacaagtcggataattaagac----------tccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtatctca 306  Q
    |||||||| ||||||  ||| |          ||||| |||| | ||| |||||||||||| |||||||||||||||||||||| ||||| | |||||||    
T  8637240 acacaagtgggataacgaagccatatatttgatccaa-tagaaatttggggatccacttcagcatttctccatgatggtgttccaagtgtatatatctca 8637338  T
Q  307 agga 310  Q
    ||||    
T  8637339 agga 8637342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 307
Target Start/End: Complemental strand, 8547864 - 8547750
Alignment:
Q  189 aaatctgatccaatgaagtgcaccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgtt 288  Q
    ||||| ||||||||||||||||| |||||||||||| |||||  |||||    ||  ||| | ||||||||||||||    ||||||||||| |||||||    
T  8547864 aaatcggatccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgtt 8547769  T
Q  289 cccagtgtgtgtatctcaa 307  Q
    || ||||||||||||||||    
T  8547768 ccgagtgtgtgtatctcaa 8547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 117 - 312
Target Start/End: Original strand, 8678087 - 8678292
Alignment:
Q  117 tggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcaccattc 216  Q
    |||||| |||||||| ||||| ||| ||||| |||| |||  |||||||||||| |||||||   ||   ||||||| |||||||||||| ||||||||     
T  8678087 tggaggagaaggaaatgattgcaacttctcagtttctaaacagaaacacaatatagacatttcttgaccctcaaatccgatccaatgaagcgcaccatta 8678186  T
Q  217 acacaagtcggataattaagactccaa---------atagacagttgaggatccacttcaacatttctccatgatggtg-ttcccagtgtgtgtatctca 306  Q
    | |||||| ||||||   || ||| ||         ||||| | |||||||||||||||| |||||||||||||||||| |||| | ||||| |||||||    
T  8678187 atacaagtgggataacggagcctcaaatctgatccaatagaaatttgaggatccacttcagcatttctccatgatggtgtttccaattgtgtttatctca 8678286  T
Q  307 aggatc 312  Q
    ||||||    
T  8678287 aggatc 8678292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 1600218 - 1600181
Alignment:
Q  26 agtcacaaatgtaaagaaatccccttaattctcccatg 63  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  1600218 agtcacaaatgtaaagaaatccctttaattctcccatg 1600181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 308
Target Start/End: Original strand, 3380803 - 3380924
Alignment:
Q  187 tcaaatctgatccaatgaagtgcaccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtg 286  Q
    |||||| |||||||||||||| | || |||||||| || ||||    |||  || ||| ||| | ||||||||||||||||| ||||||| |||||| ||    
T  3380803 tcaaatatgatccaatgaagtccgccgttcacacatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctctatgatgttg 3380902  T
Q  287 ttcccagtgtgtgtatctcaag 308  Q
    |||| |  ||||||||||||||    
T  3380903 ttccgaacgtgtgtatctcaag 3380924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 9074641 - 9074604
Alignment:
Q  26 agtcacaaatgtaaagaaatccccttaattctcccatg 63  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  9074641 agtcacaaatgtaaagaaatccctttaattctcccatg 9074604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 8535691 - 8535726
Alignment:
Q  28 tcacaaatgtaaagaaatccccttaattctcccatg 63  Q
    ||||||||||||||||||||| ||||||||||||||    
T  8535691 tcacaaatgtaaagaaatccctttaattctcccatg 8535726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 8644405 - 8644437
Alignment:
Q  31 caaatgtaaagaaatccccttaattctcccatg 63  Q
    ||||||||||| |||||||||||||||||||||    
T  8644405 caaatgtaaagtaatccccttaattctcccatg 8644437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 112 - 326
Target Start/End: Original strand, 9443369 - 9443583
Alignment:
Q  112 acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcac 211  Q
    ||||||||||| |||||||| || || ||||||||| |||| ||   ||||  |||||||||| |||||  |   |||||||| ||||||||||||||||    
T  9443369 acatgtggaggagaaggaaatgactgcaacctctcactttcaaagcagaaaaccaatattgacctttgctcatcctcaaatcttatccaatgaagtgcac 9443468  T
Q  212 cattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtatctcaaggat 311  Q
    ||||||||||||| ||||| || |||||| ||| ||| | ||||||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||||    
T  9443469 cattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggat 9443568  T
Q  312 cgcacgctcaaacac 326  Q
    | |||||||||||||    
T  9443569 cacacgctcaaacac 9443583  T

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Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 112 - 324
Target Start/End: Complemental strand, 48361687 - 48361475
Alignment:
Q  112 acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcac 211  Q
    ||||||||||| |||||||| || || | ||||||| |||| |||  |||| ||||||||||| ||||| ||   |||||||| ||||||||||||||||    
T  48361687 acatgtggaggagaaggaaatgactgcaccctctcactttcaaaacagaaaaacaatattgacctttgctgaccctcaaatcttatccaatgaagtgcac 48361588  T
Q  212 cattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgtatctcaaggat 311  Q
    ||||||||||||| ||||| |  |||||| ||| ||| |  |||||||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||    
T  48361587 cattcacacaagtgggatactcgagactcgaaaaagaaatgtgaggatccacttcaacattcctccaggatggtgttccaagtgtgtttatctcaaggat 48361488  T
Q  312 cgcacgctcaaac 324  Q
    | |||||||||||    
T  48361487 cacacgctcaaac 48361475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 187 - 326
Target Start/End: Original strand, 35780159 - 35780298
Alignment:
Q  187 tcaaatctgatccaatgaagtgcaccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtg 286  Q
    |||||| ||||||| |||||  |||||||||||||||| ||||| ||||| ||  ||||||| |   ||||||||||||||||| |||||||||||||||    
T  35780159 tcaaatttgatccagtgaagcacaccattcacacaagtgggatacttaaggcttgaaatagaaatacgaggatccacttcaacagttctccatgatggtg 35780258  T
Q  287 ttcccagtgtgtgtatctcaaggatcgcacgctcaaacac 326  Q
     ||| ||||||| ||| || |||||  |||| ||||||||    
T  35780259 ctccaagtgtgtttatttcgaggataacacgatcaaacac 35780298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 48361771 - 48361733
Alignment:
Q  25 gagtcacaaatgtaaagaaatccccttaattctcccatg 63  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  48361771 gagtcacaaatgtaaagaaatccctttaattctcccatg 48361733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 35780016 - 35780053
Alignment:
Q  26 agtcacaaatgtaaagaaatccccttaattctcccatg 63  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  35780016 agtcacaaatgtaaagaaatccctttaattctcccatg 35780053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 324
Target Start/End: Original strand, 5131028 - 5131250
Alignment:
Q  102 attttgaaaaacatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaa 201  Q
    ||||| ||| || |||||||| ||||| || ||||| || |||||| |||| ||| |||||||||| | |||| |||    || |||| || ||||||||    
T  5131028 attttcaaacacgtgtggaggagaagggaatgattgcaatctctcactttcaaaactgaaacacaacaatgacctttttctaagatcatatatgatccaa 5131127  T
Q  202 tgaagtgcaccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtgtgta 301  Q
    |||||||   ||||||||||||| ||| | | ||| ||| ||||||| |  ||| |||||||||||||||||||||||||   |||||| || |||||||    
T  5131128 tgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgta 5131227  T
Q  302 tctcaaggatcgcacgctcaaac 324  Q
    ||||||||||| |||||||||||    
T  5131228 tctcaaggatcacacgctcaaac 5131250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 26324187 - 26324131
Alignment:
Q  267 aacatttctccatgatggtgttcccagtgtgtgtatctcaaggatcgcacgctcaaa 323  Q
    |||||||||||| || |||||||| |||||||  ||| |||||||| ||||||||||    
T  26324187 aacatttctccaggacggtgttccaagtgtgttcatcccaaggatcacacgctcaaa 26324131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 187 - 305
Target Start/End: Original strand, 5012 - 5130
Alignment:
Q  187 tcaaatctgatccaatgaagtgcaccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtg 286  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||||||   |||  || | |||||||||||| |  | ||||||||||| || ||    
T  5012 tcaaatctgatccaatgaagtgcaccattcacacaagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttgatg 5111  T
Q  287 ttcccagtgtgtgtatctc 305  Q
    |||| ||||||||||||||    
T  5112 ttccgagtgtgtgtatctc 5130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 4833 - 4872
Alignment:
Q  24 tgagtcacaaatgtaaagaaatccccttaattctcccatg 63  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  4833 tgagtcacaaatgtaaagaaatccctttaattctcccatg 4872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 307
Target Start/End: Original strand, 16716713 - 16716833
Alignment:
Q  187 tcaaatctgatccaatgaagtgcaccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtg 286  Q
    |||||| ||| ||||||||||||||||||||||||||| ||||   ||||||   |||  || | |||||||||||| |  | ||||||||||| |||||    
T  16716713 tcaaatgtgaaccaatgaagtgcaccattcacacaagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttggtg 16716812  T
Q  287 ttcccagtgtgtgtatctcaa 307  Q
    |||| ||||||||||||||||    
T  16716813 ttccgagtgtgtgtatctcaa 16716833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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