View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11508_low_6 (Length: 292)
Name: NF11508_low_6
Description: NF11508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11508_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 7746024 - 7745761
Alignment:
| Q |
19 |
gatgtacctactattgatttggtgctacaagggggtgtgaagtggacaatttttggtggaaattctatggtcttggtgagtaaaaatgtagcatgtcttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7746024 |
gatgtacctactattgatttggtgctacaagggggtgtgaagtggacaatttttggtggaaattctatggccttggtgagtaaaaatgtagcatgtcttg |
7745925 |
T |
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| Q |
119 |
gatttgtggatggtggtaatgagccaagaactgctgttgtgattggtggacaccaattggaggacaatctattggagtttgatttggtttcttctaaatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7745924 |
gatttgtggatggtggtaatgagccaagaactgctgttgtgattggtggacaccaattggaggacaatctattggagtttgatttggtttcttctaaatt |
7745825 |
T |
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| Q |
219 |
aggattctcttctttgctccaacaagatgcaagttgttccagatcagaatagtaaaagtttcat |
282 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7745824 |
aggattctcttccttgctccaacaagatgcaagttgttccagatcagaatagtaaaagtttcat |
7745761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 7711568 - 7711818
Alignment:
| Q |
19 |
gatgtacctactattgatttggtgctacaagggggtgtgaagtggacaatttttggtggaaattctatggtcttggtgagtaaaaatgtagcatgtcttg |
118 |
Q |
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||||| |||||||||| |||||||||| |||| |||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |
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| T |
7711568 |
gatgtgcctactattggtttggtgctagaaggaggtgtggagtggacaatttttggtggaaattcaatggtgttggtgagtaaaaatgttgcatgtcttg |
7711667 |
T |
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| Q |
119 |
gatttgtggatggtggtaatgagccaagaactgctgttgtgattggtggacaccaattggaggacaatctattggagtttgatttggtttcttctaaatt |
218 |
Q |
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| T |
7711668 |
gatttgtggatggtggtaaagagccaagaacagctgttgtgattggtggacaccaattggaggacaatctattggagtttgatttgatttcttctaaatt |
7711767 |
T |
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| Q |
219 |
aggatt---ctcttctttgctccaacaagatgcaagttgttccagatcaga |
266 |
Q |
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|||||| |||||| ||||||| ||| ||| |||||||||||||||||| |
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| T |
7711768 |
aggattcagctcttccttgctccttcaaaatggaagttgttccagatcaga |
7711818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 7733878 - 7734121
Alignment:
| Q |
19 |
gatgtacctactattgatttggtgctacaagggggtgtgaagtggacaatttttggtggaaattctatggtcttggtgagtaaaaatgtagcatgtcttg |
118 |
Q |
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||||| |||||||||| |||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7733878 |
gatgtgcctactattggtttggtgctagaaggaggtgtggagtggacaatttttggtggaaattctatggtcttggtgagtaaaaatgtagcatgtcttg |
7733977 |
T |
|
| Q |
119 |
gatttgtggatggtggtaatgagccaagaactgctgttgtgattggtggacaccaattggaggacaatctattggagtttgatttggtttcttctaaatt |
218 |
Q |
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||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
7733978 |
gatttgtggatggtggtaaagagccaagaacagctgttgttattggtggacaccagttggaggacattgtattggagtttgatttggtttcttctaaatt |
7734077 |
T |
|
| Q |
219 |
aggatt---ctcttctttgctccaacaagatgcaagttgttcca |
259 |
Q |
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|||||| |||||| ||||||| ||| ||||||||||||||| |
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| T |
7734078 |
aggattcagctcttccttgctccttcaaaatgcaagttgttcca |
7734121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 7726456 - 7726662
Alignment:
| Q |
19 |
gatgtacctactattgatttggtgctacaagggggtgtgaagtggacaatttttggtggaaattctatggtcttggtgagtaaaaatgtagcatgtcttg |
118 |
Q |
| |
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||||| ||||||||| |||||||||| |||| |||||| |||||| |||||| ||||||||||| ||||| ||||||| ||||||||| |||||||||| |
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| T |
7726456 |
gatgtgcctactattagtttggtgctagaaggtggtgtggagtggataattttcggtggaaattcaatggttttggtgaataaaaatgttgcatgtcttg |
7726555 |
T |
|
| Q |
119 |
gatttgtggatggtggtaatgagccaagaactgctgttgtgattggtggacaccaattggaggacaatctattggagtttgatttggtttcttctaaatt |
218 |
Q |
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||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
7726556 |
gatttgtggatggtggtaaagagccaagaacagctgttgttattggtggacaccagttggaggacattgtattggagtttgatttggtttcttctaaatt |
7726655 |
T |
|
| Q |
219 |
aggattc |
225 |
Q |
| |
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||||||| |
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| T |
7726656 |
aggattc |
7726662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 7699545 - 7699751
Alignment:
| Q |
19 |
gatgtacctactattgatttggtgctacaagggggtgtgaagtggacaatttttggtggaaattctatggtcttggtgagtaaaaatgtagcatgtcttg |
118 |
Q |
| |
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|||||||| |||||||||||||| |||||||| ||||| |||||||||||| ||||||||||| ||||| ||||||| |||||| |||||| |||||| |
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| T |
7699545 |
gatgtaccaactattgatttggttctacaaggtggtgtagagtggacaatttacggtggaaattcaatggtgttggtgaataaaaaggtagcaagtcttg |
7699644 |
T |
|
| Q |
119 |
gatttgtggatggtggtaatgagccaagaactgctgttgtgattggtggacaccaattggaggacaatctattggagtttgatttggtttcttctaaatt |
218 |
Q |
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|
||||||||||||||||||| |||||| ||| | ||||| |||||||| ||||||||||||||||||||| ||||||||||||| ||||| |||||||| |
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| T |
7699645 |
gatttgtggatggtggtaaaaagccaacaacatcagttgttattggtgggcaccaattggaggacaatctactggagtttgatttagtttcatctaaatt |
7699744 |
T |
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| Q |
219 |
aggattc |
225 |
Q |
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||||||| |
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| T |
7699745 |
aggattc |
7699751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 30 - 225
Target Start/End: Original strand, 7704253 - 7704452
Alignment:
| Q |
30 |
tattgatttggtgctacaagggggtgtgaagtggacaattttt----ggtggaaattctatggtcttggtgagtaaaaatgtagcatgtcttggatttgt |
125 |
Q |
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|||||||||||| ||| || ||||||||||||||||| | | | ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
7704253 |
tattgatttggtcctaaaaaggggtgtgaagtggacagtatgtatatggtggaaattcaatggtgttggtgaataaaaatgtagcatgtcttggatttgt |
7704352 |
T |
|
| Q |
126 |
ggatggtggtaatgagccaagaactgctgttgtgattggtggacaccaattggaggacaatctattggagtttgatttggtttcttctaaattaggattc |
225 |
Q |
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|||||||||||| || ||||||| | |||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| |
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| T |
7704353 |
ggatggtggtaaagaaccaagaagatcaattgttattggtgggcaccaattggaggagaatctattggagtttgatttagtttcttccaaattaggattc |
7704452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 7766744 - 7766681
Alignment:
| Q |
155 |
ttgtgattggtggacaccaattggaggacaatctattggagtttgatttggtttcttctaaatt |
218 |
Q |
| |
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|||| ||||||||||| |||||||| |||||||| |||| ||||||||||| |||||| ||||| |
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| T |
7766744 |
ttgttattggtggacatcaattggaagacaatcttttggtgtttgatttggcttcttccaaatt |
7766681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 7774071 - 7774008
Alignment:
| Q |
155 |
ttgtgattggtggacaccaattggaggacaatctattggagtttgatttggtttcttctaaatt |
218 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| |||| ||||||||| | |||||| ||||| |
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|
| T |
7774071 |
ttgttattggtggacatcaattggaggacaatcttttggtgtttgatttagcttcttccaaatt |
7774008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 7766814 - 7766766
Alignment:
| Q |
100 |
aaaaatgtagcatgtcttggatttgtggatggtggtaatgagccaagaa |
148 |
Q |
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|||||||||||||||||||||||||| ||||| || | |||||||||| |
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| T |
7766814 |
aaaaatgtagcatgtcttggatttgttgatggagggacagagccaagaa |
7766766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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