View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11509_high_13 (Length: 350)
Name: NF11509_high_13
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11509_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 42896314 - 42896638
Alignment:
| Q |
19 |
tttaattcatgtaatgtaagtgtgtaaccatgcaaaaatgtaactaatttcaaccgtatctttttagtagtcaaatgtaacaatgataacgaaatgaatg |
118 |
Q |
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| T |
42896314 |
tttaattcatgtaatgtaagtgtgtaaccatgcaaaaatgtcactaatttcaaccgtatctttttagtagtcaaatgtaacaatgataacgaaatgaatg |
42896413 |
T |
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| Q |
119 |
aaggatggaaaagaattactacatga---tgatgatgataataatgagtaaaaaataattaagaggcatatgcttttagacatgctagttaatcaatgga |
215 |
Q |
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| T |
42896414 |
aaggatggaaaagaattactacatgatgatgatgatgatgataatgagtaaaaaataattaagaggcatatgcttttagacatgctagttaatcaatgga |
42896513 |
T |
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| Q |
216 |
tcaatcatgtaactgtaaattgtagaaagaagagggagtaatatacattaatcatgatgttaattattatacattaataataaagtgaaccaacctatca |
315 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42896514 |
tcaatcatgtaactgtaaattgtagaaaacagagggagtaatatccattaatcatgatgttaattattatacattaataataaagtgaaccaacctatca |
42896613 |
T |
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| Q |
316 |
ttctcactctttctatatgcctatg |
340 |
Q |
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| T |
42896614 |
ttctcactctttctatatgcctatg |
42896638 |
T |
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