View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11509_high_15 (Length: 337)

Name: NF11509_high_15
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11509_high_15
NF11509_high_15
[»] chr4 (18 HSPs)
chr4 (20-330)||(6625931-6626240)
chr4 (241-330)||(6592300-6592389)
chr4 (241-318)||(6749795-6749872)
chr4 (241-330)||(6833242-6833331)
chr4 (242-330)||(6716353-6716441)
chr4 (241-330)||(6667079-6667168)
chr4 (243-330)||(6647997-6648084)
chr4 (249-324)||(6793299-6793374)
chr4 (243-318)||(7889769-7889844)
chr4 (241-318)||(6549475-6549552)
chr4 (252-330)||(10034719-10034797)
chr4 (253-330)||(21227092-21227169)
chr4 (243-330)||(6770365-6770455)
chr4 (251-318)||(6712601-6712668)
chr4 (243-330)||(6812672-6812759)
chr4 (241-316)||(6537152-6537227)
chr4 (243-318)||(6501437-6501512)
chr4 (259-330)||(4332491-4332562)
[»] scaffold0552 (1 HSPs)
scaffold0552 (243-330)||(144-231)
[»] chr7 (4 HSPs)
chr7 (263-322)||(34719959-34720018)
chr7 (258-322)||(18925416-18925480)
chr7 (260-322)||(34729860-34729922)
chr7 (260-322)||(34734424-34734486)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 6626240 - 6625931
Alignment:
Q  20 taatatatatgatcaccacaaaggtgaagattnnnnnnntcagtttgttaacatttggattcataatcatcccaccaacaccaatagttaattagtatga 119  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  6626240 taatatatatgatcaccacaaaggtgaagattataaaaatcagtttgttaacatttggattcataatcattccaacaacaccaatagttaattagtatga 6626141  T
Q  120 ctgtgcattgaaaatcgaaaattaataacaaaacaaactgtgtcatagttaatgatgcatcagtggcctcaagaatttcaggaacaatatatctaagcta 219  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6626140 ctgtgaattgaaaatcgaaaattaataacaaaacaaactgtgtcatagttaatgatgcatcagtggcctcaagaatttcaggaacaatatatctaagcta 6626041  T
Q  220 tgnnnnnnnnnnnnnnnnnnngatgttttagccaaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctc 319  Q
    ||                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6626040 tg-tttttttttcttttctttgatgttttagccaaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctc 6625942  T
Q  320 tattcatctct 330  Q
    |||||||||||    
T  6625941 tattcatctct 6625931  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 241 - 330
Target Start/End: Complemental strand, 6592389 - 6592300
Alignment:
Q  241 gatgttttagccaaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctattcatctct 330  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||| |||||    
T  6592389 gatgtttcagccaaagatgtatgatgtgttcttgagtttcagaggagaagacaatcgggcaaagttcatgtcacatctctattcctctct 6592300  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 6749795 - 6749872
Alignment:
Q  241 gatgttttagccaaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatct 318  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||    
T  6749795 gatgtttcagccaaagatgtacgatgtgttcttgagtttcagaggagacgacagtcgtgcaaaattcatttcacatct 6749872  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 6833242 - 6833331
Alignment:
Q  241 gatgttttagccaaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctattcatctct 330  Q
    ||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||    
T  6833242 gatgtttcagccaaaggtgtacgatgtattcttgagtttcagaggggaagatagtcgtgcaaagttcatgtcacatctcttttcctctct 6833331  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 6716353 - 6716441
Alignment:
Q  242 atgttttagccaaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctattcatctct 330  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| ||||||||| |||| |||||    
T  6716353 atgtttcagccaaagatgtacgatgtgttcttgagtttcagaggggaagacaatcgtccaaggttcatatcacatctccattcctctct 6716441  T

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Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 6667079 - 6667168
Alignment:
Q  241 gatgttttagccaaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctattcatctct 330  Q
    ||||||| || | ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||    
T  6667079 gatgtttcagtcgaagatgtacaatgtgttcttgagtttcagaggggaagaaagtcgtgcaaagttcatgtcacacctctattcttctct 6667168  T

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Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 243 - 330
Target Start/End: Original strand, 6647997 - 6648084
Alignment:
Q  243 tgttttagccaaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctattcatctct 330  Q
    ||||| |||| ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| ||| |||||||||    
T  6647997 tgtttcagccgaagctgtacgatgtgttcttgagttttagaggggaagacagccgtgcaaagttcatgtcacatatcttttcatctct 6648084  T

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Target: chr4; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 6793299 - 6793374
Alignment:
Q  249 agccaaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctattc 324  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||  | ||||||||||||||    
T  6793299 agccaaagatgtatgatgtgttcttgagtttcagaggggaagacaatcgggcaaagtttgtgtcacatctctattc 6793374  T

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Target: chr4; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 7889844 - 7889769
Alignment:
Q  243 tgttttagccaaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatct 318  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  7889844 tgtttcagacaaagatgtacgacgtgttcttgagtttcagaggggaagactgtcgagcaaaattcatttcacatct 7889769  T

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Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 6549552 - 6549475
Alignment:
Q  241 gatgttttagccaaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatct 318  Q
    ||||||| |||||||||||||||| || |||||||||||| |||||||||| |||||||| || ||||||||||||||    
T  6549552 gatgtttcagccaaagatgtacgacgtcttcttgagtttccgaggggaagatagtcgtgcgaaattcatttcacatct 6549475  T

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Target: chr4; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 252 - 330
Target Start/End: Original strand, 10034719 - 10034797
Alignment:
Q  252 caaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctattcatctct 330  Q
    |||||||| | || |||||||||||||||||||||||||||| ||| || || |||||||||||||||||||| |||||    
T  10034719 caaagatgcatgacgtgttcttgagtttcagaggggaagacattcgcgcgaaattcatttcacatctctattcctctct 10034797  T

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Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 21227092 - 21227169
Alignment:
Q  253 aaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctattcatctct 330  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| ||  || ||||||||||||||| |||| |||||    
T  21227092 aaagatgcacgatgtgttcttgagtttcagaggggaagaaagtcatgtgaaattcatttcacatctcaattcctctct 21227169  T

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Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 330
Target Start/End: Original strand, 6770365 - 6770455
Alignment:
Q  243 tgttttagccaaagatgtacgatgtgt---tcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctattcatctct 330  Q
    ||||| |||||||||| ||||||||||   |||||||||| ||||||| ||||| |||| | ||||||||||||||||||||||| |||||    
T  6770365 tgtttcagccaaagatatacgatgtgtacttcttgagttttagaggggtagacaatcgttcgaagttcatttcacatctctattcctctct 6770455  T

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Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 6712601 - 6712668
Alignment:
Q  251 ccaaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatct 318  Q
    |||||| ||||||||||||||||||||||||||||||| ||| || ||||||| ||| ||||||||||    
T  6712601 ccaaaggtgtacgatgtgttcttgagtttcagaggggacgacggtagtgcaaaattcgtttcacatct 6712668  T

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Target: chr4; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 330
Target Start/End: Original strand, 6812672 - 6812759
Alignment:
Q  243 tgttttagccaaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctattcatctct 330  Q
    ||||| |||| ||||||||||||||| |||||||||| |||||||| ||||||||||| || |||||||| ||| | ||||| |||||    
T  6812672 tgtttcagccgaagatgtacgatgtgatcttgagttttagaggggatgacagtcgtgcgaaattcatttcccatttgtattcctctct 6812759  T

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Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 6537227 - 6537152
Alignment:
Q  241 gatgttttagccaaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacat 316  Q
    ||||||| ||||||||||||| |||||||| |||||||| |||||||| ||||||||||  || ||| ||||||||    
T  6537227 gatgtttcagccaaagatgtatgatgtgtttttgagttttagaggggacgacagtcgtgtgaaattcgtttcacat 6537152  T

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Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 6501512 - 6501437
Alignment:
Q  243 tgttttagccaaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatct 318  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||  ||||  || || |||||||||| ||||||||    
T  6501512 tgtttcagccaaagatgtacgacgtgttcttgagtttcagcggaaaagattgttgtacaaagttcatatcacatct 6501437  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 4332491 - 4332562
Alignment:
Q  259 gtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctattcatctct 330  Q
    ||||||||||||||||||||| ||||| ||||||| ||| |||   |||| ||||||||||| | |||||||    
T  4332491 gtacgatgtgttcttgagttttagaggcgaagacactcgcgcatcattcacttcacatctctctacatctct 4332562  T

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Target: scaffold0552 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 330
Target Start/End: Original strand, 144 - 231
Alignment:
Q  243 tgttttagccaaagatgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctattcatctct 330  Q
    ||||| |||| ||||||||||||||| |||||||||| |||||||| ||||||||||| || |||||||| ||| | ||||| |||||    
T  144 tgtttcagccgaagatgtacgatgtgatcttgagttttagaggggatgacagtcgtgcgaaattcatttcccatttgtattcctctct 231  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 34720018 - 34719959
Alignment:
Q  263 gatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctat 322  Q
    ||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||||    
T  34720018 gatgtgttcttgagtttcagaggggaagatactcgtgcaagattcatttcacatctctat 34719959  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 18925416 - 18925480
Alignment:
Q  258 tgtacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctat 322  Q
    ||||||| |||||||||||||||||||||  |||  |||||||||| ||||||||||||||||||    
T  18925416 tgtacgacgtgttcttgagtttcagagggatagattgtcgtgcaaaattcatttcacatctctat 18925480  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 34729922 - 34729860
Alignment:
Q  260 tacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctat 322  Q
    |||||||| |||||||||||| ||||| | |||| ||||||||| ||||||||||||||||||    
T  34729922 tacgatgtcttcttgagtttccgagggaacgacactcgtgcaaaattcatttcacatctctat 34729860  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 34734486 - 34734424
Alignment:
Q  260 tacgatgtgttcttgagtttcagaggggaagacagtcgtgcaaagttcatttcacatctctat 322  Q
    |||||||| |||||||||||| | || || |||| || |||||| ||||||||||||||||||    
T  34734486 tacgatgtcttcttgagtttccggggcgacgacactcatgcaaaattcatttcacatctctat 34734424  T

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