View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11509_high_24 (Length: 261)
Name: NF11509_high_24
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11509_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 26011590 - 26011351
Alignment:
| Q |
1 |
aatgcaaaaggaaatagcattcggaagatagatttttatagagttgcacttgaaagtgtgctaatgatgaaacgatagtcccaataattttaaaaggtgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26011590 |
aatgcaaaaggaaatagcattcggaagatagatttttatagagttgcacttgaaagtgtgctaatgatgaaacgatagtcccaataattttaaaaggtgt |
26011491 |
T |
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| Q |
101 |
gtgatggattcttgttcagatagtaacaaattctaagctaaaccaaatgataa-aaaactaaggaaagaaaagaaagataacaaatggctgatttcataa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26011490 |
gtgatggattcttgttcagatagtaacaaattctaagctaaaccaaatgataaaaaaactaaggaaagaaaagaaagataacaaatggctgatttcataa |
26011391 |
T |
|
| Q |
200 |
ctctggagatgttagcacacctctataagtaactagggct |
239 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
26011390 |
ctctagagatgttagcacacctctataagtaactagggct |
26011351 |
T |
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