View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11509_high_35 (Length: 217)

Name: NF11509_high_35
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11509_high_35
NF11509_high_35
[»] chr7 (1 HSPs)
chr7 (12-196)||(35535085-35535269)
[»] chr8 (3 HSPs)
chr8 (86-154)||(45448102-45448170)
chr8 (19-99)||(12199460-12199540)
chr8 (19-99)||(12443888-12443968)
[»] chr1 (1 HSPs)
chr1 (86-154)||(46604817-46604885)
[»] chr4 (1 HSPs)
chr4 (86-154)||(33608954-33609022)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 35535085 - 35535269
Alignment:
Q  12 agtgagatgaagttggctaatgtggctcctaatgttgtgacatataatactttgattaatgggtttggtcaagctggtaatagtgaaatggggattgggc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35535085 agtgagatgaagttggctaatgtggctcctaatgttgtgacatataatactttgattaatgggtttggtcaagctggtaatagtgaaatggggattgggc 35535184  T
Q  112 tttttgaggagatggagaggaataaagtgaaagctgatattttgacttataatggtttgattttgggactttgtaaagaagggaa 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35535185 tttttgaggagatggagaggaataaagtgaaagctgatattttgacttataatggtttgattttgggactttgtaaagaagggaa 35535269  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 45448170 - 45448102
Alignment:
Q  86 tggtaatagtgaaatggggattgggctttttgaggagatggagaggaataaagtgaaagctgatatttt 154  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  45448170 tggtaatagtaaaatggggattgggctttttgaggagatagagaggaataaagtgaaacctgatatttt 45448102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 12199540 - 12199460
Alignment:
Q  19 tgaagttggctaatgtggctcctaatgttgtgacatataatactttgattaatgggtttggtcaagctggtaatagtgaaa 99  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||||||| || ||||||||||||| | ||||||||||||    
T  12199540 tgaagttggctaacgtggctcctaatattgtgaaatataatactttgatgaaagggtttggtcaagttagtaatagtgaaa 12199460  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 12443968 - 12443888
Alignment:
Q  19 tgaagttggctaatgtggctcctaatgttgtgacatataatactttgattaatgggtttggtcaagctggtaatagtgaaa 99  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||||||| || ||||||||||||| | ||||||||||||    
T  12443968 tgaagttggctaacgtggctcctaatattgtgaaatataatactttgatgaaagggtttggtcaagttagtaatagtgaaa 12443888  T

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Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 46604817 - 46604885
Alignment:
Q  86 tggtaatagtgaaatggggattgggctttttgaggagatggagaggaataaagtgaaagctgatatttt 154  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  46604817 tggtaatagtaaaatggggattgggctttttgaggagatagagaggaataaagtgaaacctgatatttt 46604885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 33609022 - 33608954
Alignment:
Q  86 tggtaatagtgaaatggggattgggctttttgaggagatggagaggaataaagtgaaagctgatatttt 154  Q
    |||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| || |||||||    
T  33609022 tggtaatagtaaaatggggattgagctttttgaggagatagagaggaataaagtgaaaccttatatttt 33608954  T

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