View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11509_high_4 (Length: 512)
Name: NF11509_high_4
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11509_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 41785410 - 41784910
Alignment:
| Q |
1 |
cctttctgtcgatcgctgattcaacataagtttattcgaggtgattatggtttgtttttgctccgcatttattcggtcaattgttgatgtctgatccttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41785410 |
cctttctgtcgatcgctgattcaacataagtttattcgaggtgattatggtttgtttttgctccgcatttattcggtcaatggttgatgtctgatccttt |
41785311 |
T |
|
| Q |
101 |
atagttttctcttgatcagctatctggcctgtcaactttgtgttcaaagtttctatctttgctaagctttctgcatattccttctggtttcgctcattct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41785310 |
atagttttctcttgatcagctatctggcctgtcaactttgtgttcaaagtttctatctttgctaagctttctgcatattccttctggtttcgctcattct |
41785211 |
T |
|
| Q |
201 |
ggagttccaacttggttttatgttcctgcaaattgtccaacgctagcctcatgtcattaacttcagcttttaaagccatgatctccattgaagctccatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
41785210 |
ggagttccaacttggttttatgttcctgcaaattgtccaacgctagcctcatgtcattaacttcagcttttaaagccataatctcaattgaagctccatt |
41785111 |
T |
|
| Q |
301 |
ttcatcgctatcgttttcctttaaaaaatttgatatctcttcacctctttgtatcattgctgctttcagttcatggtttctatcctgcagggccttattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41785110 |
ttcatcgctatcgttttcctttaaaaaatttgatatctcttcacctctttgtatcattgctgctttcagttcatggtttctatcctgcagggccttattt |
41785011 |
T |
|
| Q |
401 |
tcattcatcagttgtttaatctcataatttgtatctcttaactgctcttccaactcatttctctgattgatttgagtttccaattcgagttccatgttct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41785010 |
tcattcatcagttgtttaatctcataatttgtatctcttaactgctcttccaactcatttctctgattgatttgagtttccaattcgagttccatgttct |
41784911 |
T |
|
| Q |
501 |
t |
501 |
Q |
| |
|
| |
|
|
| T |
41784910 |
t |
41784910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 42 - 316
Target Start/End: Complemental strand, 10834588 - 10834316
Alignment:
| Q |
42 |
tgattatggtttgtttttgctccgcatttattcggtcaattgttgatgtctgatcctttatagttttctcttgatcagctatctggcctgtcaactttgt |
141 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| ||||||| |||| || |||||| |||||||| ||||| |||||||||||||| || |||||||| |
|
|
| T |
10834588 |
tgattatggtttgtttttggtccacatttatttggtcaatggttggtgcttgatccattatagttatctct-gatcagctatctgggttgcaaactttgt |
10834490 |
T |
|
| Q |
142 |
gttcaaagtttctatctttgctaagctttctgcatattccttctggtttcgctcattctggagttccaacttggttttatgttcctgcaaattgtccaac |
241 |
Q |
| |
|
| | ||| |||| | |||||| | |||||| ||||| | |||||||||||||||||| ||| || |||||| ||||| |||| ||||| || || || |
|
|
| T |
10834489 |
ggttaaattttccacctttgccaggctttcagcatactgcttctggtttcgctcatttgagagctcgaacttgatttta-gttcatgcaagttatcgaaa |
10834391 |
T |
|
| Q |
242 |
gctagcctcatgtcattaacttcagcttttaaagccatgatctccattgaagctccattttcatcgctatcgttt |
316 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10834390 |
tctagtcccatgtcattaacttcagcttttaaagccatgatctccatcgaagctccattttcgtcgctatcgttt |
10834316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University