View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11509_high_5 (Length: 504)

Name: NF11509_high_5
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11509_high_5
NF11509_high_5
[»] chr4 (16 HSPs)
chr4 (4-488)||(7853525-7854009)
chr4 (289-426)||(37369433-37369570)
chr4 (289-426)||(5104897-5105035)
chr4 (294-426)||(24887330-24887462)
chr4 (289-390)||(28099685-28099786)
chr4 (336-426)||(16019818-16019909)
chr4 (205-258)||(25114930-25114983)
chr4 (431-488)||(50413142-50413198)
chr4 (195-255)||(22540923-22540983)
chr4 (289-396)||(7007857-7007964)
chr4 (330-426)||(26863355-26863451)
chr4 (362-425)||(20539863-20539927)
chr4 (292-396)||(25331653-25331757)
chr4 (284-396)||(40536561-40536673)
chr4 (344-426)||(9163636-9163719)
chr4 (364-418)||(56444443-56444498)
[»] chr1 (16 HSPs)
chr1 (294-426)||(42658544-42658677)
chr1 (326-426)||(27199034-27199135)
chr1 (289-392)||(1923097-1923200)
chr1 (289-392)||(19350238-19350341)
chr1 (330-426)||(26284273-26284370)
chr1 (195-255)||(2994642-2994702)
chr1 (195-255)||(32560857-32560917)
chr1 (285-396)||(956058-956169)
chr1 (289-396)||(49197762-49197869)
chr1 (284-396)||(45759454-45759566)
chr1 (289-396)||(28823883-28823990)
chr1 (289-395)||(6303776-6303882)
chr1 (284-396)||(35280256-35280368)
chr1 (289-396)||(19451282-19451389)
chr1 (282-317)||(47784300-47784335)
chr1 (99-240)||(45296508-45296649)
[»] chr5 (9 HSPs)
chr5 (284-426)||(28592996-28593139)
chr5 (285-426)||(30581991-30582132)
chr5 (291-426)||(9688372-9688508)
chr5 (356-418)||(28346601-28346664)
chr5 (306-426)||(9839993-9840114)
chr5 (306-384)||(2004469-2004547)
chr5 (289-396)||(21147718-21147825)
chr5 (291-396)||(33655584-33655689)
chr5 (292-377)||(43319232-43319317)
[»] chr3 (21 HSPs)
chr3 (284-426)||(7319036-7319178)
chr3 (289-426)||(46749926-46750063)
chr3 (289-396)||(33995991-33996098)
chr3 (289-426)||(45135655-45135793)
chr3 (191-255)||(16663345-16663409)
chr3 (289-426)||(6976156-6976294)
chr3 (284-396)||(995479-995591)
chr3 (291-400)||(46174715-46174824)
chr3 (344-419)||(50899308-50899384)
chr3 (289-396)||(3999149-3999256)
chr3 (289-396)||(29448437-29448543)
chr3 (378-426)||(10055131-10055180)
chr3 (342-398)||(5825994-5826050)
chr3 (343-426)||(23535678-23535762)
chr3 (289-392)||(45925785-45925890)
chr3 (364-426)||(12105208-12105271)
chr3 (289-324)||(31645365-31645400)
chr3 (431-488)||(52957391-52957445)
chr3 (284-377)||(6034686-6034779)
chr3 (284-324)||(50902414-50902454)
chr3 (223-255)||(52637719-52637751)
[»] chr2 (12 HSPs)
chr2 (289-392)||(34027518-34027621)
chr2 (289-388)||(1188677-1188776)
chr2 (289-392)||(20156345-20156448)
chr2 (292-388)||(17881547-17881642)
chr2 (286-396)||(43848167-43848277)
chr2 (289-393)||(22551375-22551479)
chr2 (344-426)||(21988212-21988295)
chr2 (289-396)||(44766444-44766551)
chr2 (287-359)||(37982569-37982640)
chr2 (285-396)||(305093-305203)
chr2 (294-396)||(31170101-31170203)
chr2 (284-324)||(33136655-33136695)
[»] chr7 (17 HSPs)
chr7 (289-426)||(48152334-48152471)
chr7 (289-392)||(3635118-3635221)
chr7 (289-392)||(40098468-40098570)
chr7 (327-416)||(9824715-9824805)
chr7 (327-416)||(10726640-10726730)
chr7 (195-255)||(37158051-37158111)
chr7 (191-255)||(29407775-29407837)
chr7 (284-396)||(44342997-44343109)
chr7 (289-396)||(12893946-12894053)
chr7 (284-396)||(47879690-47879802)
chr7 (284-396)||(47914768-47914880)
chr7 (285-396)||(7718797-7718908)
chr7 (431-488)||(30552079-30552135)
chr7 (284-324)||(9881397-9881437)
chr7 (288-324)||(12741432-12741468)
chr7 (284-396)||(40996125-40996237)
chr7 (223-255)||(47778114-47778146)
[»] chr6 (7 HSPs)
chr6 (289-426)||(23929270-23929408)
chr6 (289-392)||(30878780-30878883)
chr6 (284-396)||(2300145-2300257)
chr6 (306-426)||(8634703-8634824)
chr6 (289-396)||(6196941-6197048)
chr6 (223-255)||(2692132-2692164)
chr6 (288-324)||(14261551-14261587)
[»] scaffold0287 (1 HSPs)
scaffold0287 (289-392)||(10864-10967)
[»] chr8 (12 HSPs)
chr8 (289-419)||(24319181-24319301)
chr8 (290-396)||(24501324-24501430)
chr8 (284-396)||(42936789-42936901)
chr8 (362-420)||(14028019-14028078)
chr8 (289-396)||(33850932-33851039)
chr8 (283-396)||(32711123-32711236)
chr8 (284-396)||(10391690-10391802)
chr8 (289-396)||(5576135-5576242)
chr8 (289-419)||(39189451-39189582)
chr8 (364-419)||(4949633-4949689)
chr8 (223-255)||(24696118-24696150)
chr8 (344-419)||(33971953-33972029)


Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 4 - 488
Target Start/End: Original strand, 7853525 - 7854009
Alignment:
Q  4 atgaatacgtgttaagtgcaaacaatctagtgtagccaagcctcaatgtcattgatgttagtggggatgagtttagatttgcagtcttaatttaaattct 103  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7853525 atgaatccgtgttaagtgcaaacaatctagtgtagccaagcctcaatgtcattgatgttagtggggatgagtttagatttgcagtcttaatttaaattct 7853624  T
Q  104 cttttaccaaaacttaattataatacaaaaatttaacccaattttaaaaatgaagtaaactcattattaagcatgctcgactaaaaattcgatgaacaaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7853625 cttttaccaaaacttaattataatacaaaaatttaacccaattttaaaaatgaagtaaactcattattaagcatgctcgactaaaaattcgatgaacaaa 7853724  T
Q  204 tacatgaaatttacattatcaatttttattttgtgaattcaaacacaaaaaatcttaatataaatttcaaaaagttactataggagggtgtattggatta 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7853725 tacatgaaatttacattatcaatttttattttgtgaattcaaacacaaaaaatcttaatataaatttcaaaaagttactataggaggatgtattggatta 7853824  T
Q  304 atattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaagactatcaaattt 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7853825 atattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgacttttaagattttaaaagactatcaaattt 7853924  T
Q  404 gtaatttggatttcaaaggatttcaatatatatgtttaaataataaaatgctagcaggcgacaattcaaagagatcacaaccatt 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7853925 gtaatttggatttcaaaggatttcaatatatatgtttaaataataaaatgctagcagacgacaattcaaagagatcacaaccatt 7854009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 289 - 426
Target Start/End: Original strand, 37369433 - 37369570
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  ||||||||| ||||||||| ||||||||| ||||||| ||||||||||| ||||||| |||||||||| ||||||||||||||    
T  37369433 gggtgtattggattaggattttaaaaaacaatttta-catgaaaaagtctagtggattttaaaagactatgcaagattttaatgacttttaagattttaa 37369531  T
Q  389 aagactatcaa-atttgtaatttggatttcaaaggattt 426  Q
    |||| | | || |||||||||||||||||||| ||||||    
T  37369532 aagattcttaagatttgtaatttggatttcaagggattt 37369570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 289 - 426
Target Start/End: Complemental strand, 5105035 - 5104897
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaa-tctagtgaattttaaaagaatatgcaaaattttaatgatttttaagatttta 387  Q
    |||||||||||||||  |||||||||||||||||| | || |||||| ||| ||| ||||||||||| | || || |||||||||| |||||||||||||    
T  5105035 gggtgtattggattaggattttaaaagacaatttt-gtataaaaaaagtcttgtggattttaaaagactttgaaagattttaatgacttttaagatttta 5104937  T
Q  388 aaagactatcaa-atttgtaatttggatttcaaaggattt 426  Q
    ||||||||| || ||||||||||  ||||| |||||||||    
T  5104936 aaagactattaagatttgtaattgagattttaaaggattt 5104897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 426
Target Start/End: Original strand, 24887330 - 24887462
Alignment:
Q  294 tattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaagac 393  Q
    ||||||||||  ||||||||||| |||||||  |||||||| | ||||  ||||||||||| |||| || |||||||||| ||||||||||||||||||     
T  24887330 tattggattagaattttaaaagataattttat-atgaaaaagtttagtagattttaaaagactatgtaagattttaatgacttttaagattttaaaagat 24887428  T
Q  394 tatcaa-atttgtaatttggatttcaaaggattt 426  Q
      | || |||||||||||||||||||| ||||||    
T  24887429 acttaagatttgtaatttggatttcaagggattt 24887462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 390
Target Start/End: Original strand, 28099685 - 28099786
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||| ||||  |||||||||||||||||| | |||||||| |||| | |||||||||||| ||||||| |||||||||| |||||  |||||||    
T  28099685 gggtgtattgaattaggattttaaaagacaatttttgtatgaaaaagtctaataaattttaaaagattatgcaagattttaatgacttttagaattttaa 28099784  T
Q  389 aa 390  Q
    ||    
T  28099785 aa 28099786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 426
Target Start/End: Complemental strand, 16019909 - 16019818
Alignment:
Q  336 tctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaagactatc-aaatttgtaatttggatttcaaaggattt 426  Q
    ||||||| ||||||||||| | ||||| ||||| |||| ||||||||||||||||||||||| |||||| | || ||||||| |||||||||    
T  16019909 tctagtggattttaaaagactttgcaagattttcatgacttttaagattttaaaagactatcaaaatttatcatatggattttaaaggattt 16019818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 25114983 - 25114930
Alignment:
Q  205 acatgaaatttacattatcaatttttattttgtgaattcaaacacaaaaaatct 258  Q
    ||||||||||| | ||| |||||||||||||||||||||||||||| |||||||    
T  25114983 acatgaaattttctttagcaatttttattttgtgaattcaaacacagaaaatct 25114930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 431 - 488
Target Start/End: Original strand, 50413142 - 50413198
Alignment:
Q  431 atatatgtttaaataataaaatgctagcaggcgacaattcaaagagatcacaaccatt 488  Q
    ||||||||||||||||||||||| |||||||  |||||||||| ||||||||||||||    
T  50413142 atatatgtttaaataataaaatgttagcaggttacaattcaaa-agatcacaaccatt 50413198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 22540923 - 22540983
Alignment:
Q  195 atgaacaaatacatgaaatttacattatcaatttttattttgtgaattcaaacacaaaaaa 255  Q
    ||||||||| | ||||||||| | ||| |||||||||||||||||||||||||||| ||||    
T  22540923 atgaacaaaaatatgaaattttctttagcaatttttattttgtgaattcaaacacagaaaa 22540983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 396
Target Start/End: Complemental strand, 7007964 - 7007857
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  ||||||||||| |||||| |  | ||||| ||| | | ||||||||||| | |||| |||||| |||| ||| | ||||||||    
T  7007964 gggtgtattggattaggattttaaaagataatttttgtttaaaaaagtcttgaggattttaaaagactttgcagaattttgatgactttgatgattttaa 7007865  T
Q  389 aagactat 396  Q
    ||||||||    
T  7007864 aagactat 7007857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 26863451 - 26863355
Alignment:
Q  330 aaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaagactatcaa-atttgtaatttggatttcaaaggattt 426  Q
    ||||||| | ||| |||||| || | |||||||||||||||||| |||||||  |||||||||||||||| |||| ||||||| |||| ||| |||||    
T  26863451 aaaaaatattgtggattttataacattatgcaaaattttaatgaattttaag-ctttaaaagactatcaagatttttaatttgaattttaaacgattt 26863355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 20539927 - 20539863
Alignment:
Q  362 aaattttaatgatttttaagattttaaaagactatc-aaatttgtaatttggatttcaaaggatt 425  Q
    ||||||||| || |||||||||||||||||| |||| |||||||||||||| ||| || ||||||    
T  20539927 aaattttaacgacttttaagattttaaaagattatcaaaatttgtaatttgaattacataggatt 20539863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 396
Target Start/End: Complemental strand, 25331757 - 25331653
Alignment:
Q  292 tgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaag 391  Q
    ||||||||||||  |||||||| ||||||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| |||| ||| | |||||||||||    
T  25331757 tgtattggattaggattttaaaggacaatttttgtttaaaaaagtcttgaggattttaaaagactttgcaagattttgatgactttgatgattttaaaag 25331658  T
Q  392 actat 396  Q
    |||||    
T  25331657 actat 25331653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 396
Target Start/End: Original strand, 40536561 - 40536673
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagat 383  Q
    ||||||||||||||||||||  |||||||| || |||||| |  | ||||| ||| | | ||||||||||| | ||||  ||||| |||| ||| | |||    
T  40536561 taggagggtgtattggattatgattttaaaggataatttttgtttaaaaaagtcttggggattttaaaagactttgcaggattttgatgactttgatgat 40536660  T
Q  384 tttaaaagactat 396  Q
    |||||||||||||    
T  40536661 tttaaaagactat 40536673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 426
Target Start/End: Complemental strand, 9163719 - 9163636
Alignment:
Q  344 attttaaaagaatatgcaaaattttaatgatttttaagattttaaaagactatcaa-atttgtaatttggatttcaaaggattt 426  Q
    ||||||||||| | | ||  |||||||||| ||||| |||||||||||| |||||| ||||  |||||||||||||| ||||||    
T  9163719 attttaaaagattttccatgattttaatgacttttatgattttaaaagaatatcaagatttacaatttggatttcaatggattt 9163636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 56444443 - 56444498
Alignment:
Q  364 attttaatgatttttaagattttaaaagactatca-aatttgtaatttggatttca 418  Q
    |||||||||||||| | ||||||||||||||||||  |||| ||||||||||||||    
T  56444443 attttaatgattttcatgattttaaaagactatcaggatttttaatttggatttca 56444498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 294 - 426
Target Start/End: Complemental strand, 42658677 - 42658544
Alignment:
Q  294 tattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaagac 393  Q
    ||||||||||  |||||||||||||||||| |||||||||| ||||||| ||||||||||| ||||||| |||| ||||| ||||||||||||||||||     
T  42658677 tattggattaggattttaaaagacaatttttgcatgaaaaagtctagtggattttaaaagactatgcaagatttcaatgacttttaagattttaaaagat 42658578  T
Q  394 tatcaa-atttgtaatttggatttcaaaggattt 426  Q
    | |||| |||||||||||||||||||| ||||||    
T  42658577 tctcaagatttgtaatttggatttcaatggattt 42658544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 326 - 426
Target Start/End: Complemental strand, 27199135 - 27199034
Alignment:
Q  326 catgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaagactatcaa-atttgtaatttggatttcaaaggat 424  Q
    ||||||||| ||||||| ||||| ||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  27199135 catgaaaaagtctagtggattttgaaagactatgcaagattttaatgacttttaagattttaaaagactatcaagattggtaatttggatttcaaaggat 27199036  T
Q  425 tt 426  Q
    ||    
T  27199035 tt 27199034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 392
Target Start/End: Original strand, 1923097 - 1923200
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  |||||||||||| ||||| | |||||||| ||||||| ||||||||||| ||||||| |||||||||| ||||| ||||||||    
T  1923097 gggtgtattggattaggattttaaaagactatttttgtatgaaaaagtctagtggattttaaaagattatgcaagattttaatgacttttaggattttaa 1923196  T
Q  389 aaga 392  Q
    ||||    
T  1923197 aaga 1923200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 392
Target Start/End: Complemental strand, 19350341 - 19350238
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    ||||||||| |||||  ||||||||||| | |||| ||||||| |||||| ||   |||||||||| ||| |||||||||||||||||||||||||||||    
T  19350341 gggtgtattagattaggattttaaaagaaattttttgcatgaataaatcttgtaggttttaaaagactattcaaaattttaatgatttttaagattttaa 19350242  T
Q  389 aaga 392  Q
    ||||    
T  19350241 aaga 19350238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 26284370 - 26284273
Alignment:
Q  330 aaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaagactatc-aaatttgtaatttggatttcaaaggattt 426  Q
    ||||||||| ||| |||||| |||| | ||||| |||||||| | ||||||||||||||||||||||| ||| || |||||||||||||||| |||||    
T  26284370 aaaaaatcttgtgcattttataagactttgcaagattttaattacttttaagattttaaaagactatcaaaacttataatttggatttcaaatgattt 26284273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 2994702 - 2994642
Alignment:
Q  195 atgaacaaatacatgaaatttacattatcaatttttattttgtgaattcaaacacaaaaaa 255  Q
    ||||||||| ||||||||||| | ||| |||||||||||||||||||||||||||| ||||    
T  2994702 atgaacaaaaacatgaaattttctttagcaatttttattttgtgaattcaaacacagaaaa 2994642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 32560917 - 32560857
Alignment:
Q  195 atgaacaaatacatgaaatttacattatcaatttttattttgtgaattcaaacacaaaaaa 255  Q
    ||||||||| ||||||||||| | ||| |||||||||||||||||||||||||||| ||||    
T  32560917 atgaacaaaaacatgaaattttctttagcaatttttattttgtgaattcaaacacagaaaa 32560857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 396
Target Start/End: Complemental strand, 956169 - 956058
Alignment:
Q  285 aggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagatt 384  Q
    |||||||||||||||||||  |||||||||||||||||| |  | ||||| ||| | | ||||||||||| | ||||  ||||| |||| ||| | ||||    
T  956169 aggagggtgtattggattagaattttaaaagacaatttttgtttaaaaaagtcttgaggattttaaaagactttgcaggattttgatgactttgatgatt 956070  T
Q  385 ttaaaagactat 396  Q
    ||||||||||||    
T  956069 ttaaaagactat 956058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 49197762 - 49197869
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  |||||||||||||||||| |  | ||||| | | | | ||||||||||| | ||||||||||| |||| ||| | ||||||||    
T  49197762 gggtgtattggattaggattttaaaagacaatttttgtttaaaaaagttttgaggattttaaaagactttgcaaaattttgatgactttgatgattttaa 49197861  T
Q  389 aagactat 396  Q
    ||||||||    
T  49197862 aagactat 49197869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 396
Target Start/End: Original strand, 45759454 - 45759566
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagat 383  Q
    |||| |||||||||||||||  |||||||| ||||||||| |  ||||||| | | | | ||||||||||| | ||||| ||||| |||| ||| | |||    
T  45759454 taggggggtgtattggattaggattttaaaggacaatttttgtttgaaaaagttttgaggattttaaaagactttgcaacattttgatgactttgatgat 45759553  T
Q  384 tttaaaagactat 396  Q
    |||||||||||||    
T  45759554 tttaaaagactat 45759566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 28823883 - 28823990
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    ||||||||||||||||||||| ||| ||||||||| |  | ||||| ||| | | ||||||||||| | || || ||||| |||| ||| | ||||||||    
T  28823883 gggtgtattggattaatatttcaaaggacaatttttgtttaaaaaagtcttgaggattttaaaagactttgtaagattttgatgactttgatgattttaa 28823982  T
Q  389 aagactat 396  Q
    ||||||||    
T  28823983 aagactat 28823990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 395
Target Start/End: Original strand, 6303776 - 6303882
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  |||||||| ||||||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| |||| ||| | ||||||||    
T  6303776 gggtgtattggattaggattttaaaggacaatttttgtttaaaaaagtcttgaggattttaaaagactttgcaagattttgatgactttgatgattttaa 6303875  T
Q  389 aagacta 395  Q
    |||||||    
T  6303876 aagacta 6303882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 396
Target Start/End: Complemental strand, 35280368 - 35280256
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagat 383  Q
    |||| |||||||||||||||  |||||||| ||||||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| || | ||||| ||     
T  35280368 taggggggtgtattggattaggattttaaaggacaatttttgtttaaaaaagtcttgaggattttaaaagactttgcaagattttgattacttttatgaa 35280269  T
Q  384 tttaaaagactat 396  Q
    |||||||||||||    
T  35280268 tttaaaagactat 35280256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 19451282 - 19451389
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  |||||||| || |||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| |||| ||| | ||||||||    
T  19451282 gggtgtattggattatgattttaaaggataatttttgtttaaaaaagtcttgaggattttaaaagactttgcaagattttgatgactttgatgattttaa 19451381  T
Q  389 aagactat 396  Q
    ||||||||    
T  19451382 aagactat 19451389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 317
Target Start/End: Original strand, 47784300 - 47784335
Alignment:
Q  282 tataggagggtgtattggattaatattttaaaagac 317  Q
    ||||||||||||||||||||||| ||||||||||||    
T  47784300 tataggagggtgtattggattaagattttaaaagac 47784335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 240
Target Start/End: Complemental strand, 45296649 - 45296508
Alignment:
Q  99 attctcttttaccaaaacttaattataatacaaaaatttaacccaattttaaaaatgaagtaaactcattattaagcatgctcgactaaaaattcgatga 198  Q
    ||||||||| || |||| ||||||||||||||||||  ||||||   ||| ||||| || ||||| | |||| |||| ||| | || | |||||||||||    
T  45296649 attctctttcactaaaatttaattataatacaaaaacataacccggattttaaaattaactaaacaccttatcaagcttgcccaaccataaattcgatga 45296550  T
Q  199 acaaatacatgaaatttacattatcaatttttattttgtgaa 240  Q
    |||||  |||  ||||| | |||||  |||||||| ||||||    
T  45296549 acaaaagcatttaatttcctttatccgtttttattctgtgaa 45296508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 284 - 426
Target Start/End: Original strand, 28592996 - 28593139
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaattttagcatgaaaaa-atctagtgaattttaaaagaatatgcaaaattttaatgatttttaaga 382  Q
    |||| |||||||||||||||  ||||||||||||||||||| |||||||||  ||| ||| ||||||||| | |||| || |||||||||| ||||||||    
T  28592996 taggggggtgtattggattaggattttaaaagacaatttta-catgaaaaaggtcttgtggattttaaaatactatgaaagattttaatgacttttaaga 28593094  T
Q  383 ttttaaaagactatcaa-atttgtaatttggatttcaaaggattt 426  Q
    |||||||||| | |||| |||||||||||||||||||||||||||    
T  28593095 ttttaaaagattctcaagatttgtaatttggatttcaaaggattt 28593139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 285 - 426
Target Start/End: Original strand, 30581991 - 30582132
Alignment:
Q  285 aggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagatt 384  Q
    |||||||||||||| ||||  |||| ||||||||||||| | |||||||| ||| ||| ||||||||||| ||| || ||||||| |||||||||||| |    
T  30581991 aggagggtgtattgaattagaattt-aaaagacaatttttgtatgaaaaagtcttgtggattttaaaagactatacataattttagtgatttttaagact 30582089  T
Q  385 ttaaaagacta-tcaaatttgtaatttggatttcaaaggattt 426  Q
    ||||||||||| | |||||||||||||||||||||||| ||||    
T  30582090 ttaaaagactattaaaatttgtaatttggatttcaaagaattt 30582132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 426
Target Start/End: Original strand, 9688372 - 9688508
Alignment:
Q  291 gtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaa 390  Q
    |||||||||||||  | |||| |||||||||||  ||||||||| | ||||| ||||||||||| | || || ||| | |||| ||||||||||||||||    
T  9688372 gtgtattggattaggaatttagaagacaatttttacatgaaaaagtttagtggattttaaaagattttgtaagattgtcatgacttttaagattttaaaa 9688471  T
Q  391 gactatcaa-atttgtaatttggatttcaaaggattt 426  Q
    ||||||||| |||| | || |||||||||||||||||    
T  9688472 gactatcaagatttatcatatggatttcaaaggattt 9688508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 28346601 - 28346664
Alignment:
Q  356 tatgcaaaattttaatgatttttaagattttaaaagactatc-aaatttgtaatttggatttca 418  Q
    ||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  28346601 tatgcaagattttaatgacttttaagattttaaaagactatcaaaatttgtaatttgaatttca 28346664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 426
Target Start/End: Original strand, 9839993 - 9840114
Alignment:
Q  306 attttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaagactatcaa-atttg 404  Q
    |||||||||||||||||| | || ||||| ||| ||| ||||||||| | | || || |||| ||||| |||||||||||||||||| | | || |||||    
T  9839993 attttaaaagacaatttttgtataaaaaagtcttgtggattttaaaaaactttgaaagatttgaatgacttttaagattttaaaagattgttaagatttg 9840092  T
Q  405 taatttggatttcaaaggattt 426  Q
    ||||| |||||| |||||||||    
T  9840093 taattgggattttaaaggattt 9840114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 2004547 - 2004469
Alignment:
Q  306 attttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagatt 384  Q
    ||||||||||| ||| || | |||||||| ||||||| ||||||||||| ||  |||||||||||||| ||||||||||    
T  2004547 attttaaaagaaaatatttgaatgaaaaagtctagtggattttaaaagactacacaaaattttaatgacttttaagatt 2004469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 396
Target Start/End: Complemental strand, 21147825 - 21147718
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  |||||||| ||||||||| |  | ||||| ||| | | ||||||||||| | | ||| ||||| |||| ||| | ||||||||    
T  21147825 gggtgtattggattaggattttaaaggacaatttttgtttaaaaaagtcttgaggattttaaaagattttccaagattttgatgactttgatgattttaa 21147726  T
Q  389 aagactat 396  Q
    ||||||||    
T  21147725 aagactat 21147718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 396
Target Start/End: Original strand, 33655584 - 33655689
Alignment:
Q  291 gtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaa 390  Q
    ||||||| |||||  |||||||| ||||||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| |||| ||| | ||||||||||    
T  33655584 gtgtattagattaggattttaaaggacaatttttgtttaaaaaagtcttgaggattttaaaagactttgcaagattttgatgactttgatgattttaaaa 33655683  T
Q  391 gactat 396  Q
    ||||||    
T  33655684 gactat 33655689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 377
Target Start/End: Original strand, 43319232 - 43319317
Alignment:
Q  292 tgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttt 377  Q
    ||||||||||||  |||||||||||||||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| ||||||||    
T  43319232 tgtattggattaggattttaaaagacaatttttgtttaaaaaagtcttgaggattttaaaagactttgcaagattttgatgatttt 43319317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 284 - 426
Target Start/End: Complemental strand, 7319178 - 7319036
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagat 383  Q
    |||| |||||||||||||||  |||||||||||||||||| | || ||||||||| ||| ||||||||||| | || || |||||||||| |||||||||    
T  7319178 taggggggtgtattggattaggattttaaaagacaatttt-gtataaaaaaatcttgtggattttaaaagactttgaaagattttaatgacttttaagat 7319080  T
Q  384 tttaaaagactatcaa-atttgtaatttggatttcaaaggattt 426  Q
    ||||||||||||| || ||||||||||  ||||| |||||||||    
T  7319079 tttaaaagactattaagatttgtaattgagattttaaaggattt 7319036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 289 - 426
Target Start/End: Complemental strand, 46750063 - 46749926
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  |||||||||||||||||| | |||||||| || |||| ||||||||||| |||  || |||||||||| ||||| ||||||||    
T  46750063 gggtgtattggattacgattttaaaagacaatttttg-atgaaaaagtccagtggattttaaaagattattgaagattttaatgacttttacgattttaa 46749965  T
Q  389 aagactatcaa-atttgtaatttggatttcaaaggattt 426  Q
     ||| | |||| |||||||||||||||||||| ||||||    
T  46749964 gagattctcaagatttgtaatttggatttcaagggattt 46749926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 33995991 - 33996098
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||| |||||||| ||||||||| |  | ||||| ||| | ||||||||||||| | ||||||||||| |||| ||| | ||||||||    
T  33995991 gggtgtattggattaagattttaaaggacaatttttgtttaaaaaagtcttgagaattttaaaagactttgcaaaattttgatgactttgatgattttaa 33996090  T
Q  389 aagactat 396  Q
    ||||||||    
T  33996091 aagactat 33996098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 426
Target Start/End: Complemental strand, 45135793 - 45135655
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaa-tctagtgaattttaaaagaatatgcaaaattttaatgatttttaagatttta 387  Q
    ||||||||| |||||  |||||||||||||||||| | || |||||| ||| ||| ||||||||||| | || || |||||||||| |||||| ||||||    
T  45135793 gggtgtatttgattaggattttaaaagacaatttt-gtataaaaaaagtcttgtgtattttaaaagactttgaaagattttaatgacttttaaaatttta 45135695  T
Q  388 aaagactatcaa-atttgtaatttggatttcaaaggattt 426  Q
    ||||||||| || ||||||||||  ||||| |||||||||    
T  45135694 aaagactattaagatttgtaattgagattttaaaggattt 45135655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 16663345 - 16663409
Alignment:
Q  191 ttcgatgaacaaatacatgaaatttacattatcaatttttattttgtgaattcaaacacaaaaaa 255  Q
    ||||||||||||| ||||||||||| | ||| |||||||||||||||||||||||||||| ||||    
T  16663345 ttcgatgaacaaaaacatgaaattttctttaccaatttttattttgtgaattcaaacacagaaaa 16663409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 426
Target Start/End: Complemental strand, 6976294 - 6976156
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    ||||||||| |||||  |||||||| ||||||||| || | ||||| |||   | ||||||||||| | || |  |||||||||| ||||| ||||||||    
T  6976294 gggtgtatttgattatgattttaaaggacaatttttgcttaaaaaagtctcaaggattttaaaagactttgtaggattttaatgacttttatgattttaa 6976195  T
Q  389 aagactatcaa-atttgtaatttggatttcaaaggattt 426  Q
    ||||||||||| ||||  |||||||||||||| ||||||    
T  6976194 aagactatcaagatttacaatttggatttcaatggattt 6976156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 284 - 396
Target Start/End: Original strand, 995479 - 995591
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagat 383  Q
    |||| |||||||||||||||  |||||||| ||||||||| |  | ||||||||| | | ||||||||||| | ||||| ||||| |||| ||| | |||    
T  995479 taggggggtgtattggattaggattttaaaggacaatttttgtttaaaaaaatcttgaggattttaaaagactttgcaagattttgatgactttgatgat 995578  T
Q  384 tttaaaagactat 396  Q
    |||||||||||||    
T  995579 tttaaaagactat 995591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 400
Target Start/End: Complemental strand, 46174824 - 46174715
Alignment:
Q  291 gtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaa 390  Q
    ||||||| |||||  ||||||||||| |||||| |  | ||||| | | | ||||||||||||| | ||||  ||||||| || ||||||||||||||||    
T  46174824 gtgtattcgattaggattttaaaagataatttttgtttaaaaaagttttgagaattttaaaagattttgcatgattttaaggacttttaagattttaaaa 46174725  T
Q  391 gactatcaaa 400  Q
    ||||||||||    
T  46174724 gactatcaaa 46174715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 419
Target Start/End: Original strand, 50899308 - 50899384
Alignment:
Q  344 attttaaaagaatatgcaaaattttaatgatttttaagattttaaaagactatca-aatttgtaatttggatttcaa 419  Q
    ||||||||||| | || |  |||||||||||||||| |||||||||||||||||| |||||  ||||||||||||||    
T  50899308 attttaaaagattttgtaggattttaatgatttttatgattttaaaagactatcagaattttcaatttggatttcaa 50899384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 3999149 - 3999256
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  |||||||| ||||||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| |||| ||| | ||||||||    
T  3999149 gggtgtattggattaggattttaaaggacaatttttgtttaaaaaagtcttgaggattttaaaagactttgcaagattttgatgactttgatgattttaa 3999248  T
Q  389 aagactat 396  Q
    ||||||||    
T  3999249 aagactat 3999256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 29448437 - 29448543
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  ||||||||| |||||||| |  | ||||| ||| | ||||||||||||| | ||||| ||||| ||||  ||| |||||||||    
T  29448437 gggtgtattggattaggattttaaaaaacaatttttgtttaaaaaagtcttgagaattttaaaagactttgcaagattttgatga-ctttgagattttaa 29448535  T
Q  389 aagactat 396  Q
    ||||||||    
T  29448536 aagactat 29448543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 426
Target Start/End: Original strand, 10055131 - 10055180
Alignment:
Q  378 taagattttaaaagactatcaa-atttgtaatttggatttcaaaggattt 426  Q
    ||||||||||||||| | |||| |||||||||||||||||||||||||||    
T  10055131 taagattttaaaagattctcaagatttgtaatttggatttcaaaggattt 10055180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 398
Target Start/End: Complemental strand, 5826050 - 5825994
Alignment:
Q  342 gaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaagactatca 398  Q
    ||||||||||||| | || ||||||||||||||||| | ||||||||||| ||||||    
T  5826050 gaattttaaaagattttgtaaaattttaatgattttcatgattttaaaagcctatca 5825994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 426
Target Start/End: Original strand, 23535678 - 23535762
Alignment:
Q  343 aattttaaaagaatatgcaaaattttaatgatttttaagattttaaaagactatcaa-atttgtaatttggatttcaaaggattt 426  Q
    |||||||||||| | ||||  ||||||| || ||||| |||||||||| |||||||| ||||  |||||||||||||| ||||||    
T  23535678 aattttaaaagattttgcatgattttaacgacttttatgattttaaaaaactatcaagatttacaatttggatttcaatggattt 23535762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 392
Target Start/End: Original strand, 45925785 - 45925890
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaa---tctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattt 385  Q
    |||||| ||| ||||  ||||||||||||||||||| ||| ||||||   ||| ||| ||||||||| | | ||||| |||||||| | |||||||||||    
T  45925785 gggtgtgttgaattaggattttaaaagacaatttta-cataaaaaaaaagtcttgtggattttaaaatattgtgcaagattttaataacttttaagattt 45925883  T
Q  386 taaaaga 392  Q
    |||||||    
T  45925884 taaaaga 45925890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 426
Target Start/End: Complemental strand, 12105271 - 12105208
Alignment:
Q  364 attttaatgatttttaagattttaaaagactatc-aaatttgtaatttggatttcaaaggattt 426  Q
    |||||||||| ||| | ||||||||||||||||| ||||||  |||||||||||||| ||||||    
T  12105271 attttaatgactttcatgattttaaaagactatcaaaattttcaatttggatttcaatggattt 12105208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 31645365 - 31645400
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaatttta 324  Q
    |||||||||||||||| |||||||||||||||||||    
T  31645365 gggtgtattggattaagattttaaaagacaatttta 31645400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 52957445 - 52957391
Alignment:
Q  431 atatatgtttaaataataaaatgctagcaggcgacaattcaaagagatcacaaccatt 488  Q
    ||||||||||||||||||||||| ||||||  || |||||||| ||||||||||||||    
T  52957445 atatatgtttaaataataaaatgttagcag--gaaaattcaaa-agatcacaaccatt 52957391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 377
Target Start/End: Original strand, 6034686 - 6034779
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttt 377  Q
    ||||| ||||||||| ||||  ||||||||||||||| || || | ||||| ||| ||| ||||||||||| | || |  ||||||||||||||    
T  6034686 taggatggtgtattgaattaggattttaaaagacaatgtttgcttaaaaaagtctcgtggattttaaaagactttgtatgattttaatgatttt 6034779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 50902414 - 50902454
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaatttta 324  Q
    |||| |||||||||||||||| |||||||||||| ||||||    
T  50902414 taggggggtgtattggattaagattttaaaagactatttta 50902454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 52637751 - 52637719
Alignment:
Q  223 caatttttattttgtgaattcaaacacaaaaaa 255  Q
    |||||||||||||||||||||||||||| ||||    
T  52637751 caatttttattttgtgaattcaaacacagaaaa 52637719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 392
Target Start/End: Original strand, 34027518 - 34027621
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    ||||||||| |||||  |||||||||||  ||||| | |||||||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||    
T  34027518 gggtgtatttgattaggattttaaaagattatttttgtatgaaaaaatctagtgaattttaaaagattatgcaagattttaatgacttttaggattttaa 34027617  T
Q  389 aaga 392  Q
    ||||    
T  34027618 aaga 34027621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 289 - 388
Target Start/End: Original strand, 1188677 - 1188776
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  ||||||||||| |||||| | |||||||| |||| |||||||||||||| ||||||| |||| ||||| ||||||||||||||    
T  1188677 gggtgtattggattaggattttaaaagaaaatttttgtatgaaaaagtctaatgaattttaaaagattatgcaagatttgaatgacttttaagattttaa 1188776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 392
Target Start/End: Original strand, 20156345 - 20156448
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  |||||||||||| ||||| | |||||||| ||||||  ||||||||||| |||| || |||||||||| ||||| ||||||||    
T  20156345 gggtgtattggattaggattttaaaagactatttttgtatgaaaaagtctagtagattttaaaagattatgtaagattttaatgacttttaggattttaa 20156444  T
Q  389 aaga 392  Q
    ||||    
T  20156445 aaga 20156448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 388
Target Start/End: Original strand, 17881547 - 17881642
Alignment:
Q  292 tgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    ||||||||||||  |||||||||||  ||||| | |||||||| ||||||| ||||||||||| ||||||| |||||||  ||||||||||||||||    
T  17881547 tgtattggattaggattttaaaagatcatttttg-atgaaaaagtctagtgtattttaaaagattatgcaagattttaacaatttttaagattttaa 17881642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 286 - 396
Target Start/End: Complemental strand, 43848277 - 43848167
Alignment:
Q  286 ggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattt 385  Q
    ||||||||||||||||||  |||||||||||||||||| |  | ||||||||| | ||||||||||||| | | ||  ||||| |||| ||  | |||||    
T  43848277 ggagggtgtattggattatgattttaaaagacaatttttgtttaaaaaaatcttgagaattttaaaagactttacaggattttgatgacttagatgattt 43848178  T
Q  386 taaaagactat 396  Q
    |||||||||||    
T  43848177 taaaagactat 43848167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 393
Target Start/End: Original strand, 22551375 - 22551479
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||| |||||||| ||||||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| |||| ||| | ||||||||    
T  22551375 gggtgtattggattaagattttaaaggacaatttttgtttaaaaaagtcttgaggattttaaaagactttgcaagattttgatgactttgatgattttaa 22551474  T
Q  389 aagac 393  Q
    |||||    
T  22551475 aagac 22551479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 426
Target Start/End: Complemental strand, 21988295 - 21988212
Alignment:
Q  344 attttaaaagaatatgcaaaattttaatgatttttaagattttaaaagactatcaa-atttgtaatttggatttcaaaggattt 426  Q
    ||||||||||| | || || |||||||||| |||||||||||||||||| | | || |||||||||| |||||| |||||||||    
T  21988295 attttaaaagactttgaaagattttaatgacttttaagattttaaaagattgttaagatttgtaattgggattttaaaggattt 21988212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 396
Target Start/End: Complemental strand, 44766551 - 44766444
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||| ||||  |||||||||||||||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| |||| ||| | ||||||||    
T  44766551 gggtgtattgaattaggattttaaaagacaatttttgtttaaaaaagtcttgaggattttaaaagattttgcaagattttgatgactttgatgattttaa 44766452  T
Q  389 aagactat 396  Q
    ||||||||    
T  44766451 aagactat 44766444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 37982640 - 37982569
Alignment:
Q  287 gagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatg 359  Q
    ||||| |||||| ||||  ||||||||||||||||||  ||||||||| ||||||| ||||||||||| ||||    
T  37982640 gagggggtattgaattaggattttaaaagacaattttt-catgaaaaagtctagtggattttaaaagactatg 37982569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 396
Target Start/End: Original strand, 305093 - 305203
Alignment:
Q  285 aggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagatt 384  Q
    |||||||||||||||||||  ||||| |||||||||||| |  | ||||||||| | | ||||||||||| | ||||   |||| || | ||| ||||||    
T  305093 aggagggtgtattggattaggatttt-aaagacaatttttgtttaaaaaaatcttgaggattttaaaagactttgcagggttttgataactttgaagatt 305191  T
Q  385 ttaaaagactat 396  Q
    ||||||||||||    
T  305192 ttaaaagactat 305203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 396
Target Start/End: Original strand, 31170101 - 31170203
Alignment:
Q  294 tattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaagac 393  Q
    ||||||||||  |||||||| ||||||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| |||| ||| | |||||||||||||    
T  31170101 tattggattaggattttaaaggacaatttttgttttaaaaagtcttgaggattttaaaagactttgcaagattttgatgactttgatgattttaaaagac 31170200  T
Q  394 tat 396  Q
    |||    
T  31170201 tat 31170203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 33136695 - 33136655
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaatttta 324  Q
    |||| |||||||||||||||  |||||||||||||||||||    
T  33136695 taggggggtgtattggattaggattttaaaagacaatttta 33136655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 426
Target Start/End: Original strand, 48152334 - 48152471
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||| | ||||| |||||||| ||| |||||||||  | | ||| |||||||| || ||||||| |||||||| | ||||||||||||||    
T  48152334 gggtgtattggattgagattttgaaagacaacttttgcatgaaaattttt-gtggattttaaatgattatgcaagattttaattacttttaagattttaa 48152432  T
Q  389 aagactatcaa-atttgtaatttggatttcaaaggattt 426  Q
    || ||||| || |||||||||||| ||||||||||||||    
T  48152433 aaaactattaagatttgtaatttgaatttcaaaggattt 48152471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 392
Target Start/End: Complemental strand, 3635221 - 3635118
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  ||||||||||||||||||   |||||||| ||||||| |||| |||||| ||||||| ||| |||||| ||||| ||||||||    
T  3635221 gggtgtattggattaggattttaaaagacaatttttatatgaaaaagtctagtggatttaaaaagattatgcaagattgtaatgacttttaggattttaa 3635122  T
Q  389 aaga 392  Q
    ||||    
T  3635121 aaga 3635118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 392
Target Start/End: Complemental strand, 40098570 - 40098468
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    ||||||||| |||||  |||||||||||  ||||| | |||||||| || |||||||||||||||| ||||||| |||||||||| ||||| ||||||||    
T  40098570 gggtgtatttgattaggattttaaaagattatttttgtatgaaaaagtc-agtgaattttaaaagattatgcaagattttaatgacttttaggattttaa 40098472  T
Q  389 aaga 392  Q
    ||||    
T  40098471 aaga 40098468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 416
Target Start/End: Original strand, 9824715 - 9824805
Alignment:
Q  327 atgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaagactatcaa-atttgtaatttggattt 416  Q
    |||||||| | |||||||||||||||||||||| || |||| ||||| ||||||||||||||| |||||| || | |||||||||||||||    
T  9824715 atgaaaaagtttagtgaattttaaaagaatatgtaagatttcaatgagttttaagattttaaacgactataaagaattgtaatttggattt 9824805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 416
Target Start/End: Original strand, 10726640 - 10726730
Alignment:
Q  327 atgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaagactatcaa-atttgtaatttggattt 416  Q
    |||||||| | |||||||||||||||||||||| || |||| ||||| ||||||||||||||| |||||| || | |||||||||||||||    
T  10726640 atgaaaaagtttagtgaattttaaaagaatatgtaagatttcaatgagttttaagattttaaacgactataaagaattgtaatttggattt 10726730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 37158111 - 37158051
Alignment:
Q  195 atgaacaaatacatgaaatttacattatcaatttttattttgtgaattcaaacacaaaaaa 255  Q
    ||||||||| ||||||||||| | ||| |||||||||||||||||||||||||||| ||||    
T  37158111 atgaacaaaaacatgaaattttctttagcaatttttattttgtgaattcaaacacagaaaa 37158051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 29407837 - 29407775
Alignment:
Q  191 ttcgatgaacaaatacatgaaatttacattatcaatttttattttgtgaattcaaacacaaaaaa 255  Q
    ||||||||||||| ||||||||||| | ||| |||||||||  ||||||||||||||||||||||    
T  29407837 ttcgatgaacaaaaacatgaaattttctttagcaattttta--ttgtgaattcaaacacaaaaaa 29407775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 396
Target Start/End: Original strand, 44342997 - 44343109
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagat 383  Q
    |||| |||||||||||||||  |||||||| ||||||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| |||| ||| | |||    
T  44342997 taggggggtgtattggattaggattttaaaggacaatttttgtttaaaaaagtcttgaggattttaaaagactttgcaagattttcatgactttgatgat 44343096  T
Q  384 tttaaaagactat 396  Q
    |||||||||||||    
T  44343097 tttaaaagactat 44343109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 396
Target Start/End: Complemental strand, 12894053 - 12893946
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  |||||||| ||||||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| |||| ||| | ||||||||    
T  12894053 gggtgtattggattaggattttaaaggacaatttttgtttaaaaaagtcttgaggattttaaaagactttgcaagattttgatgactttgatgattttaa 12893954  T
Q  389 aagactat 396  Q
    ||||||||    
T  12893953 aagactat 12893946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 396
Target Start/End: Complemental strand, 47879802 - 47879690
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagat 383  Q
    |||| |||||||||||||||  ||||||||||| |||||| |  | ||||| ||| | | ||||||||||| | ||||  ||||| |||| ||| | |||    
T  47879802 taggggggtgtattggattaggattttaaaagataatttttgtttaaaaaagtcttgaggattttaaaagactttgcaggattttgatgactttgatgat 47879703  T
Q  384 tttaaaagactat 396  Q
    |||||||||||||    
T  47879702 tttaaaagactat 47879690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 396
Target Start/End: Complemental strand, 47914880 - 47914768
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagat 383  Q
    |||| |||||||||||||||  ||||||||||| |||||| |  | ||||| ||| | | ||||||||||| | ||||  ||||| |||| ||| | |||    
T  47914880 taggggggtgtattggattaggattttaaaagataatttttgtttaaaaaagtcttgaggattttaaaagactttgcaggattttgatgactttgatgat 47914781  T
Q  384 tttaaaagactat 396  Q
    |||||||||||||    
T  47914780 tttaaaagactat 47914768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 396
Target Start/End: Original strand, 7718797 - 7718908
Alignment:
Q  285 aggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagatt 384  Q
    |||| ||||||||||||||  ||||||||  |||||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| |||| ||| | ||||    
T  7718797 aggaaggtgtattggattaggattttaaagaacaatttttgtttaaaaaagtcttgaggattttaaaagactttgcaagattttgatgactttgatgatt 7718896  T
Q  385 ttaaaagactat 396  Q
    ||||||||||||    
T  7718897 ttaaaagactat 7718908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 488
Target Start/End: Original strand, 30552079 - 30552135
Alignment:
Q  431 atatatgtttaaataataaaatgctagcaggcgacaattcaaagagatcacaaccatt 488  Q
    |||||| ||||||||||||||||||||||||  | ||||| ||||||| |||||||||    
T  30552079 atatatatttaaataataaaatgctagcaggtcaaaattc-aagagattacaaccatt 30552135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 9881397 - 9881437
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaatttta 324  Q
    |||| |||||||||||||||  |||||||||||||||||||    
T  9881397 taggggggtgtattggattaggattttaaaagacaatttta 9881437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 12741468 - 12741432
Alignment:
Q  288 agggtgtattggattaatattttaaaagacaatttta 324  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  12741468 agggtgtattggattaagattttaaaagactatttta 12741432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 396
Target Start/End: Original strand, 40996125 - 40996237
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagat 383  Q
    |||| |||||||||| ||||  |||||||| || |||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| |||| ||| | |||    
T  40996125 taggggggtgtattgtattaggattttaaaggataatttttgattaaaaaagtcttgaggattttaaaagactttgcaagattttgatgactttgatgat 40996224  T
Q  384 tttaaaagactat 396  Q
    |||||||||||||    
T  40996225 tttaaaagactat 40996237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 47778146 - 47778114
Alignment:
Q  223 caatttttattttgtgaattcaaacacaaaaaa 255  Q
    |||||||||||||||||||||||||||| ||||    
T  47778146 caatttttattttgtgaattcaaacacagaaaa 47778114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 426
Target Start/End: Complemental strand, 23929408 - 23929270
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  |||||||||||||||||| | || ||||| ||  ||||||||||||||| | || || |||||||| | ||||||||||||||    
T  23929408 gggtgtattggattaggattttaaaagacaatttttgtataaaaaagtcctgtgaattttaaaagactttgaaagattttaataacttttaagattttaa 23929309  T
Q  389 aagactatcaa-atttgtaatttggatttcaaaggattt 426  Q
    |||||||| || |||| ||||| |||||| | |||||||    
T  23929308 aagactattaagatttataattgggattttagaggattt 23929270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 392
Target Start/End: Complemental strand, 30878883 - 30878780
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    ||||||||| |||||  |||||||||||| ||||| | |||||||| ||||||| || |||||||| ||||||| |||||||||| ||||| ||||||||    
T  30878883 gggtgtatttgattagaattttaaaagactatttttgtatgaaaaagtctagtggatattaaaagattatgcaagattttaatgacttttaggattttaa 30878784  T
Q  389 aaga 392  Q
    ||||    
T  30878783 aaga 30878780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 396
Target Start/End: Original strand, 2300145 - 2300257
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagat 383  Q
    |||| |||||||||||||||  |||||||| ||||||||| |  | ||||||||| | | ||||||||||| | ||||| ||||| |||| ||| | |||    
T  2300145 taggggggtgtattggattaggattttaaaggacaatttttgtttaaaaaaatcttgaggattttaaaagactttgcaagattttgatgactttgatgat 2300244  T
Q  384 tttaaaagactat 396  Q
    ||||||| |||||    
T  2300245 tttaaaatactat 2300257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 426
Target Start/End: Original strand, 8634703 - 8634824
Alignment:
Q  306 attttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaaagactatcaa-atttg 404  Q
    ||||||||||| | ||||   || ||||| ||| ||||||||||||||| | || || |||| ||||| |||||||||||||||||| | | || |||||    
T  8634703 attttaaaagaaattttttctataaaaaagtcttgtgaattttaaaagactttgaaagatttgaatgacttttaagattttaaaagattgttaagatttg 8634802  T
Q  405 taatttggatttcaaaggattt 426  Q
    ||||  |||||| |||||||||    
T  8634803 taatagggattttaaaggattt 8634824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 6196941 - 6197048
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  |||||||| ||||||||| |  | ||||| ||| | | ||||||||||| | | ||| ||||| |||| ||| | ||||||||    
T  6196941 gggtgtattggattaggattttaaaggacaatttttgtttaaaaaagtcttgaggattttaaaagactttccaagattttgatgactttgatgattttaa 6197040  T
Q  389 aagactat 396  Q
    ||||||||    
T  6197041 aagactat 6197048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 2692164 - 2692132
Alignment:
Q  223 caatttttattttgtgaattcaaacacaaaaaa 255  Q
    |||||||||||||||||||||||||||| ||||    
T  2692164 caatttttattttgtgaattcaaacacagaaaa 2692132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 14261551 - 14261587
Alignment:
Q  288 agggtgtattggattaatattttaaaagacaatttta 324  Q
    ||||||||||||||||  |||||||||||||||||||    
T  14261551 agggtgtattggattatgattttaaaagacaatttta 14261587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 392
Target Start/End: Original strand, 10864 - 10967
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  ||||||||||||||||||   |||||||| ||||||| |||| |||||| ||||||| ||| |||||| ||||| ||||||||    
T  10864 gggtgtattggattaggattttaaaagacaatttttatatgaaaaagtctagtggatttaaaaagattatgcaagattgtaatgacttttaggattttaa 10963  T
Q  389 aaga 392  Q
    ||||    
T  10964 aaga 10967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 419
Target Start/End: Complemental strand, 24319301 - 24319181
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||| ||||||||||| |||||||||||||||||| || ||||||| | || |||||||||||||          |||||||||| ||||||||||||||    
T  24319301 gggtttattggattaagattttaaaagacaatttt-gcctgaaaaagtgtactgaattttaaaag----------attttaatgacttttaagattttaa 24319213  T
Q  389 aagactatcaa-atttgtaatttggatttcaa 419  Q
    || | | |||| ||||||||||||||||||||    
T  24319212 aatattttcaagatttgtaatttggatttcaa 24319181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 290 - 396
Target Start/End: Original strand, 24501324 - 24501430
Alignment:
Q  290 ggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaaa 389  Q
    ||||||||||||||  |||||||| ||||||||| |  | ||||||||| | | ||||||||||| | ||||| ||||| |||| ||| | |||||||||    
T  24501324 ggtgtattggattaggattttaaaggacaatttttgtttaaaaaaatcttgaggattttaaaagattttgcaagattttgatgactttgatgattttaaa 24501423  T
Q  390 agactat 396  Q
    |||||||    
T  24501424 agactat 24501430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 396
Target Start/End: Original strand, 42936789 - 42936901
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagat 383  Q
    ||||||||||||||||||||  |||||||| ||||||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| |||| ||| | |||    
T  42936789 taggagggtgtattggattaggattttaaaggacaatttttgtttaaaaaagtcttgaggattttaaaagactttgcaagattttgatgactttgatgat 42936888  T
Q  384 tttaaaagactat 396  Q
    ||| |||||||||    
T  42936889 tttgaaagactat 42936901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 420
Target Start/End: Original strand, 14028019 - 14028078
Alignment:
Q  362 aaattttaatgatttttaagattttaaaagactatcaa-atttgtaatttggatttcaaa 420  Q
    |||||||||| | |||||||||||| |||||||||||| |||| ||||||||||||||||    
T  14028019 aaattttaataacttttaagatttttaaagactatcaatatttataatttggatttcaaa 14028078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 396
Target Start/End: Complemental strand, 33851039 - 33850932
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  |||||||| ||||||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| |||| ||| | ||||||||    
T  33851039 gggtgtattggattaggattttaaaggacaatttttgtttaaaaaagtcttgaggattttaaaagactttgcaagattttgatgactttgatgattttaa 33850940  T
Q  389 aagactat 396  Q
    ||||||||    
T  33850939 aagactat 33850932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 396
Target Start/End: Original strand, 32711123 - 32711236
Alignment:
Q  283 ataggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaaga 382  Q
    |||||||||||||||||||||  |||||||| || |||||| |  | ||||| ||| | | ||||||||||| | ||||  ||||| |||| ||| | ||    
T  32711123 ataggagggtgtattggattaggattttaaaggataatttttgtttaaaaaagtcttgaggattttaaaagactttgcaggattttgatgactttgatga 32711222  T
Q  383 ttttaaaagactat 396  Q
    ||||||||||||||    
T  32711223 ttttaaaagactat 32711236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 396
Target Start/End: Original strand, 10391690 - 10391802
Alignment:
Q  284 taggagggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagat 383  Q
    |||| |||||||||||||||  |||||||| || |||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| |||| ||| | |||    
T  10391690 taggggggtgtattggattagaattttaaaggataatttttgtttaaaaaagtcttgaggattttaaaagactttgcaagattttgatgactttgatgat 10391789  T
Q  384 tttaaaagactat 396  Q
    |||||||||||||    
T  10391790 tttaaaagactat 10391802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 5576135 - 5576242
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    |||||||||||||||  |||||||| ||||||||| |  | ||||| ||| | | ||||||||||| | ||||| ||||| | || ||| | ||||||||    
T  5576135 gggtgtattggattaggattttaaaggacaatttttgtttaaaaaagtcttggggattttaaaagactttgcaagattttgacgactttgatgattttaa 5576234  T
Q  389 aagactat 396  Q
    ||||||||    
T  5576235 aagactat 5576242  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 419
Target Start/End: Original strand, 39189451 - 39189582
Alignment:
Q  289 gggtgtattggattaatattttaaaagacaattttagcatgaaaaaatctagtgaattttaaaagaatatgcaaaattttaatgatttttaagattttaa 388  Q
    ||||||||| |||||  |||||||| |||||||||||| | ||||| |||     ||||||||||| | || |  |||||||||| ||| | ||||||||    
T  39189451 gggtgtattagattaggattttaaaggacaattttagcttaaaaaagtctcaaagattttaaaagattttgtaggattttaatgactttcatgattttaa 39189550  T
Q  389 aagactatca-aatttgtaatttggatttcaa 419  Q
    ||||||||||  ||||  ||||||||||||||    
T  39189551 aagactatcaggattttcaatttggatttcaa 39189582  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 419
Target Start/End: Original strand, 4949633 - 4949689
Alignment:
Q  364 attttaatgatttttaagattttaaaagacta-tcaaatttgtaatttggatttcaa 419  Q
    |||||||| ||||| | ||||||||||||||| | |||||| |||||||||||||||    
T  4949633 attttaataattttgatgattttaaaagactattaaaatttataatttggatttcaa 4949689  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 24696118 - 24696150
Alignment:
Q  223 caatttttattttgtgaattcaaacacaaaaaa 255  Q
    |||||||||||||||||||||||||||| ||||    
T  24696118 caatttttattttgtgaattcaaacacagaaaa 24696150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 419
Target Start/End: Original strand, 33971953 - 33972029
Alignment:
Q  344 attttaaaagaatatgcaaaattttaatgatttttaagattttaaaagactatcaa-atttgtaatttggatttcaa 419  Q
    ||||||||||| | |||| ||||||||||| ||| | | ||||||||||||||||| ||||  |||||| |||||||    
T  33971953 attttaaaagactctgcagaattttaatgactttgatggttttaaaagactatcaagatttacaatttgaatttcaa 33972029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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