View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11509_high_9 (Length: 412)
Name: NF11509_high_9
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11509_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 396
Target Start/End: Original strand, 34747903 - 34748283
Alignment:
| Q |
13 |
gagaagcgagacgagagcaacaacgggacaatgctctaggattgtaagagatagagacaacacatcttcactcaaaaccttaagaccacgcctgcaccta |
112 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34747903 |
gagaaacgagacgagagcaacatcgggacaatgctctaggatcgtaagagatagagacaacacatcttcactcaaaaccttaagaccacgtctgcaccta |
34748002 |
T |
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| Q |
113 |
aaatcttaattggagaatcgggagagttgcaatatgctaaacattcaggatcactaagagacattgacaccatgtctttatccaaaaccacaaggcaata |
212 |
Q |
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|||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34748003 |
aaatcttaattggagaatcgggggagtcgcaataggctaaacattcaggatcactaagagacattgacaccatgtctttatccaaaaccacaaggcaata |
34748102 |
T |
|
| Q |
213 |
gatttatgaaccctctcacttatctactgcttaacactcacnnnnnnnatgaaacgtgagacttctaactcacctcaaacttgtcacatcatttggtata |
312 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34748103 |
gatttatgaaccctcacacttatatactgcttaacactcactttttttatgaaacgtgagacttctaactcacctcaaacttgtcacaacatttggtata |
34748202 |
T |
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| Q |
313 |
tggatcatatagtagatagctcgagcatcaatgtataagcattagctttggatatttactatattaagtcttggataaaacttg |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34748203 |
tggatcatatagtagatagctcgagcatcaatgtataagcattagctttgga---ttactatattaagtcttggataaaacttg |
34748283 |
T |
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