View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11509_low_11 (Length: 408)
Name: NF11509_low_11
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11509_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 30116097 - 30116476
Alignment:
| Q |
18 |
gattcatccctttcatgggaaagtcgccttagaattgcatgtgaggttgccggagcagtgacatatatgcatttctcagcttctattccaatcttccata |
117 |
Q |
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| T |
30116097 |
gattcatccctttcatgggaaagtcgccttagaattgcatgtgaggttgccggagcagtgacatatatgcatttctcagcttctattccaatcttccata |
30116196 |
T |
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| Q |
118 |
gagacataaaaccaagtaacatactcctagacaataactatagtgccaaagtgtctgattttggaacatctagatcaatcccattagataagactcattt |
217 |
Q |
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| T |
30116197 |
gagacataaaaccaagtaacatactcctagacaataactatagtgccaaagtgtctgattttggaacatctagatcaatcccattagataagactcattt |
30116296 |
T |
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| Q |
218 |
aaccacagccgtaggaggtacttttgggtacatggatcctgaatattttcagtcaagtcaatttacagataagagtgacgtatatagtttcggtgtggtg |
317 |
Q |
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| T |
30116297 |
aaccacagcagtaggaggtacttttgggtacatggatcctgaatattttcagtcaagtcaatttacagataagagtgatgtatatagtttcggcgtggtg |
30116396 |
T |
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| Q |
318 |
cttgttgagcttataaccggtagaaagccgataacattcaatgatgaagatgagggtcagaatatgacggcacatttcat |
397 |
Q |
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| T |
30116397 |
cttgttgagcttataaccggtagaaagccaataacattcaatgatgaagatgagggtcagaatatgacggcacatttcat |
30116476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 24 - 397
Target Start/End: Original strand, 30106012 - 30106385
Alignment:
| Q |
24 |
tccctttcatgggaaagtcgccttagaattgcatgtgaggttgccggagcagtgacatatatgcatttctcagcttctattccaatcttccatagagaca |
123 |
Q |
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| T |
30106012 |
tccctttcatgggaaaaccgcctaagaattgcatgtgaagttgctggagcagtggcatatatgcatttttcggcttctattccaatcttccacagagaca |
30106111 |
T |
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| Q |
124 |
taaaaccaagtaacatactcctagacaataactatagtgccaaagtgtctgattttggaacatctagatcaatcccattagataagactcatttaaccac |
223 |
Q |
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||||||| | |||||||| ||||||| ||||| ||||||||| || ||||||||||| ||||| |||||||| ||| ||||||||||||| ||||||| |
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| T |
30106112 |
taaaacccacaaacatactactagacagtaactttagtgccaaggtatctgattttgggacatcaagatcaataccactagataagactcacctaaccac |
30106211 |
T |
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| Q |
224 |
agccgtaggaggtacttttgggtacatggatcctgaatattttcagtcaagtcaatttacagataagagtgacgtatatagtttcggtgtggtgcttgtt |
323 |
Q |
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| T |
30106212 |
atttgtaggtggaacttacgggtacatagatcctgaatatttccagtccaatcaattcactaataagagtgatgtatacagtttcggggtcgtgcttgta |
30106311 |
T |
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| Q |
324 |
gagcttataaccggtagaaagccgataacattcaatgatgaagatgagggtcagaatatgacggcacatttcat |
397 |
Q |
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| T |
30106312 |
gagctcataaccagtagaaagcctatttcattctatgatgaagatgacggtcagaatttgattgcacatttcat |
30106385 |
T |
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