View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11509_low_12 (Length: 368)
Name: NF11509_low_12
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11509_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 38088295 - 38087957
Alignment:
| Q |
18 |
gcaccagcttcacaaaatggaagagctcatagtgcaacaagggatggatatcgagaatggggagattcttctatttctgatactgtggcaactatagact |
117 |
Q |
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| T |
38088295 |
gcaccagcttcacaaaatggaagagctcatagtgcaacaagggatggatatcgagaatggggagattcttctatttctgatactgtggcaactatagact |
38088196 |
T |
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| Q |
118 |
tcctagctcaaaggtttaattcacattaattaaatgtccccttcattttttggtttccaattaaatgtccctttttattcttctataaaaatactcatgt |
217 |
Q |
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| T |
38088195 |
tcctagctcaaaggtttaattcacattaattaaatgtccccttcatattttggtttccaattaaatgtccc-ttttattcttctataaaaatactcatgt |
38088097 |
T |
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| Q |
218 |
ccactcagtt--tggtccacttctatttttaaaattaaccatacattattccaattttgattcttaaattagtcttttagggtgacataaaattgttact |
315 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38088096 |
ccactcagtttgtggtccacttctatttttaaaattaaccatacattattccaattttgattcttaaattagtcttttagggtgacataaaattgttact |
38087997 |
T |
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| Q |
316 |
tcaagcgtcttattttagtagattgtttggttcggcgtct |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
38087996 |
tcaagcgtcttattttagtagattgtttggttcggcgtct |
38087957 |
T |
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