View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11509_low_13 (Length: 356)
Name: NF11509_low_13
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11509_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 38215173 - 38214842
Alignment:
| Q |
1 |
cagtcaaaatatcggtggtcatttggtcaagattgaacaactcacattgaagtttgatattttgatcgaataatcacccacatctcaaatgcgttacatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
38215173 |
cagtcaaaatatcggtggtcatttggtcaagattgaacaactcacattgaagtttgatattttgatcgaataatcaccaatatctcaaatgcgttacatt |
38215074 |
T |
|
| Q |
101 |
aggggatccaaattcaaagatttttggtctaacatgaaagttaattttattacagctgtagcaaacattgatacaagtggaataagcatgcttgaagagt |
200 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38215073 |
ttgggatccaaattcaaagattttcggtccaacatgaaagttaattttattacagctgtagcaaacattgatacaagtggaataagcatgcttgaagagt |
38214974 |
T |
|
| Q |
201 |
tcaagaagacagtcgacagaaaagggctacaagtaattattcaccgcatctcatctttacacaacaaatttaaatatcaaattatttgtcactttagaat |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38214973 |
tcaagaagacggtcgacagaaaagggctacaagtaattattcaccgcatctcatctttacacaacaaatttaaatatcaaattatttgtcactttagaat |
38214874 |
T |
|
| Q |
301 |
atcagaagagtattaattgatattttgttcac |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38214873 |
atcagaagagtattaattgatattttgttcac |
38214842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 31750714 - 31750760
Alignment:
| Q |
153 |
cagctgtagcaaacattgatacaagtggaataagcatgcttgaagag |
199 |
Q |
| |
|
||||||| | ||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
31750714 |
cagctgttggaaatattgatacaagtggaataagtatgcttgaagag |
31750760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University