View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11509_low_15 (Length: 337)

Name: NF11509_low_15
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11509_low_15
NF11509_low_15
[»] chr1 (2 HSPs)
chr1 (18-244)||(46268668-46268894)
chr1 (257-295)||(46268594-46268632)
[»] scaffold0015 (1 HSPs)
scaffold0015 (257-321)||(63446-63510)
[»] chr8 (1 HSPs)
chr8 (257-321)||(36339731-36339795)
[»] chr7 (1 HSPs)
chr7 (257-321)||(35819056-35819120)
[»] chr5 (2 HSPs)
chr5 (257-321)||(17131061-17131125)
chr5 (257-321)||(32243358-32243422)
[»] chr4 (3 HSPs)
chr4 (257-322)||(45147343-45147408)
chr4 (257-321)||(19752487-19752551)
chr4 (257-321)||(19787255-19787319)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 46268894 - 46268668
Alignment:
Q  18 cttgcagcatttatttatgatgtagttattgaagaacttacaatttaatattaaaaatccttaaatggttataaaaattgttattttctttagtcgttgt 117  Q
    |||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46268894 cttggagcatttatttatgatgcagttattgaagaacttataatttaatactaaacatccttaaatggttataaaaattgttattttctttagtcgttgt 46268795  T
Q  118 gaatagagatttgtgttgaattcttgaagaaccttttgatcttagtattagttgatccaaatgtgtattacccataatatttatgactaattgttaataa 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46268794 gaatagagatttgtgttgaatttttgaagaaccttttgatcttagtattagttgatccaaatgtgtattacccataatatttatgactaattgttaataa 46268695  T
Q  218 tgttgttattatttcagaaatccctta 244  Q
    |||||||||||||||||||||||||||    
T  46268694 tgttgttattatttcagaaatccctta 46268668  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 46268632 - 46268594
Alignment:
Q  257 ctgtagatcgaccgatttgcaagggtttcctcaccaccg 295  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  46268632 ctgtagatcgaccgatttgcaagggtttccccaccaccg 46268594  T

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Target: scaffold0015 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 63510 - 63446
Alignment:
Q  257 ctgtagatcgaccgatttgcaagggtttcctcaccaccgttcgagttcaaatttaaggcttccgt 321  Q
    ||||||||||||| |||||||||||||||| |||||||||||| || ||||||| ||||| ||||    
T  63510 ctgtagatcgaccaatttgcaagggtttccccaccaccgttcgcgtccaaatttcaggctcccgt 63446  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 36339731 - 36339795
Alignment:
Q  257 ctgtagatcgaccgatttgcaagggtttcctcaccaccgttcgagttcaaatttaaggcttccgt 321  Q
    ||||||||||||| |||||||||||||||| |||||||||||| || ||||||| ||||| ||||    
T  36339731 ctgtagatcgaccaatttgcaagggtttccccaccaccgttcgcgtccaaatttcaggctcccgt 36339795  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 35819056 - 35819120
Alignment:
Q  257 ctgtagatcgaccgatttgcaagggtttcctcaccaccgttcgagttcaaatttaaggcttccgt 321  Q
    ||||||||||||| |||||||||||||||| |||||||||||| || ||||||| ||||| ||||    
T  35819056 ctgtagatcgaccaatttgcaagggtttccccaccaccgttcgcgtccaaatttcaggctcccgt 35819120  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 17131061 - 17131125
Alignment:
Q  257 ctgtagatcgaccgatttgcaagggtttcctcaccaccgttcgagttcaaatttaaggcttccgt 321  Q
    ||||||||||||| |||||||||||||||| |||||||||||| || ||||||| ||||| ||||    
T  17131061 ctgtagatcgaccaatttgcaagggtttccccaccaccgttcgcgtccaaatttcaggctcccgt 17131125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 32243358 - 32243422
Alignment:
Q  257 ctgtagatcgaccgatttgcaagggtttcctcaccaccgttcgagttcaaatttaaggcttccgt 321  Q
    ||||||||||||| |||||||||||||||| |||||||||||| || ||||||| ||||| ||||    
T  32243358 ctgtagatcgaccaatttgcaagggtttccccaccaccgttcgcgtccaaatttcaggctcccgt 32243422  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 45147343 - 45147408
Alignment:
Q  257 ctgtagatcgaccgatttgcaagggtttcctcaccaccgttcgagttcaaatttaaggcttccgtt 322  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  || ||||||| |||||||||||    
T  45147343 ctgtagatcgaccaatttgaaagggtttccccaccaccgttcacgtccaaatttcaggcttccgtt 45147408  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 19752487 - 19752551
Alignment:
Q  257 ctgtagatcgaccgatttgcaagggtttcctcaccaccgttcgagttcaaatttaaggcttccgt 321  Q
    ||||||||||||| |||||||||||||| | |||||||||||| || ||||||| ||||| ||||    
T  19752487 ctgtagatcgaccaatttgcaagggttttcccaccaccgttcgcgtccaaatttcaggctcccgt 19752551  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 19787319 - 19787255
Alignment:
Q  257 ctgtagatcgaccgatttgcaagggtttcctcaccaccgttcgagttcaaatttaaggcttccgt 321  Q
    ||||||||||||| |||||||||||||| | |||||||||||| || ||||||| ||||| ||||    
T  19787319 ctgtagatcgaccaatttgcaagggttttcccaccaccgttcgcgtccaaatttcaggctcccgt 19787255  T

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