View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11509_low_19 (Length: 323)

Name: NF11509_low_19
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11509_low_19
NF11509_low_19
[»] chr7 (15 HSPs)
chr7 (12-308)||(39563306-39563602)
chr7 (12-308)||(39354217-39354522)
chr7 (12-308)||(39537190-39537497)
chr7 (12-308)||(39546650-39546959)
chr7 (165-308)||(39339538-39339681)
chr7 (130-308)||(1084017-1084196)
chr7 (109-308)||(39366927-39367125)
chr7 (12-83)||(39366798-39366869)
chr7 (12-76)||(39339372-39339436)
chr7 (197-298)||(39588403-39588504)
chr7 (156-308)||(39621248-39621400)
chr7 (12-73)||(1084235-1084296)
chr7 (2-72)||(39574145-39574215)
chr7 (3-73)||(39588618-39588688)
chr7 (185-289)||(39573934-39574038)
[»] chr4 (1 HSPs)
chr4 (188-247)||(2896424-2896483)
[»] chr1 (1 HSPs)
chr1 (194-237)||(2159901-2159944)
[»] chr2 (2 HSPs)
chr2 (200-244)||(44210194-44210238)
chr2 (200-244)||(44233215-44233259)


Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 39563602 - 39563306
Alignment:
Q  12 agagatatatgtggggccacttggacataattcttccaatttaatcaattactttgaggtaggtacaaaatagatatagatatccaattaaaagtaatca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39563602 agagatatatgtggggccacttggacataattcttccaatttaatcaattactttgaggtaggtagaaaatagatatagatatccaattaaaagtaatca 39563503  T
Q  112 ttattatgtttcaaattgttatcttttgttaacatttcgataagtacacacttttgtcttgaaggggatccatggtgttagcaagattaaagacggttat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39563502 ttattatgtttcaaattgttatcttttgttaacatttcgataagtacacacttttgtcttgaaggggatccatggtgttagcaagattaaagacggttat 39563403  T
Q  212 aatccagcaacgtggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagaggtgtaccaaaattcagagttataca 308  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39563402 aatccagcaacatggatgttggaagtcacaacttcatcaaaagaaagggaattggggattgattttgcagaggtgtaccaaaattcagagttataca 39563306  T

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Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 39354217 - 39354522
Alignment:
Q  12 agagatatatgtggggccacttggacataattcttccaatttaatcaattactttgaggtaggtacaaaatagatatagatatccaattaaaagtaa--- 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| || || |||  |||| | |||||        
T  39354217 agagatatatgtgggcccacttggacataattcttccaatttaatcaatcactttgaggtaggtagaatatatatgtatatagacaatgataagtatgga 39354316  T
Q  109 -------tcattattatgtttcaaattgttatctt-ttgttaacatttcgataagtacacacttttgtcttgaaggggatccatggtgttagcaagatta 200  Q
           ||| | ||||| |||||||| ||||||| ||||||||||||| | | ||||||||||  ||||||||||| ||||| |||||||| ||||| |    
T  39354317 attgatttcaattttatgcttcaaattattatcttcttgttaacatttcaaaatgtacacactt--gtcttgaagggaatccaaggtgttagaaagatca 39354414  T
Q  201 aagacggttataatccagcaacgtggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagaggtgtaccaaaattcaga 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  39354415 aagacggttataatccagcaacatggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagagttgtacaaaaattcaga 39354514  T
Q  301 gttataca 308  Q
    ||||||||    
T  39354515 gttataca 39354522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 39537497 - 39537190
Alignment:
Q  12 agagatatatgtggggccacttggacataattcttccaatttaatcaattactttgaggtaggtacaaaatagatatagatatccaattaaaagtaa--- 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| || ||||||||||||||||| | |||||||        
T  39537497 agagatatatgtggggccacttggacataattcttccaatttaatcagctactttgaggtaggtagaatatagatatagatatccattgaaaagtaggga 39537398  T
Q  109 ---------tcattattatgtttcaaattgttatctt-ttgttaacatttcgataagtacacacttttgtcttgaaggggatccatggtgttagcaagat 198  Q
             ||||| ||||| || ||||| ||||| | |||| |||||| | | | ||||| ||||  ||||||||||| ||  | ||||||||||||||    
T  39537397 atactgaattcatttttatgctttaaattattatcatcttgtgaacattacaaaatgtacatactt--gtcttgaagggaataaaaggtgttagcaagat 39537300  T
Q  199 taaagacggttataatccagcaacgtggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagaggtgtaccaaaattca 298  Q
    |||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39537299 taaatacggttataatccagcaacatggatgttggaagtcaccacttcatctaaagaaagggaattggggattgattttgcagaggtgtacaaaaattca 39537200  T
Q  299 gagttataca 308  Q
    ||||||||||    
T  39537199 gagttataca 39537190  T

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Target: chr7; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 39546959 - 39546650
Alignment:
Q  12 agagatatatgtggggccacttggacataattcttccaatttaatcaattactttgaggtaggtacaaaatagatatagatatccaattaaaagtaa--- 108  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||| || ||||||||||||||||| | |||||||        
T  39546959 agagatatatgtggggtcacttggacataattcttccaatttaatcagctactttgaggtaggtagaatatagatatagatatccagtgaaaagtacgga 39546860  T
Q  109 ---------tcattattatgtttcaaattgttatctttt-gttaacatttcgataagtacacacttttgtcttgaaggggatccatggtgttagcaagat 198  Q
             ||||| ||||| |||||||  ||||||||| ||||| |  || ||| || || |||||| | |||||||| ||||||||||||| ||||||    
T  39546859 attctgaattcatttttatggttcaaatcattatctttttgttaatagctcaatacgtccatacttttatgttgaagggaatccatggtgttaacaagat 39546760  T
Q  199 taaagacggttataatccagcaacgtggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagaggtgtaccaaaattca 298  Q
     ||||| ||||||||||||||||| |||||||||||| |||||| |||||||||||||   || ||||||||||||||||||||||||||| ||||||||    
T  39546759 caaagagggttataatccagcaacatggatgttggaaatcacaaattcatctaaagaagtagatttggggattgattttgcagaggtgtacaaaaattca 39546660  T
Q  299 gagttataca 308  Q
    || |||||||    
T  39546659 gatttataca 39546650  T

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Target: chr7; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 165 - 308
Target Start/End: Original strand, 39339538 - 39339681
Alignment:
Q  165 ttgtcttgaaggggatccatggtgttagcaagattaaagacggttataatccagcaacgtggatgttggaagtcacaacttcatctaaagaaagggaatt 264  Q
    ||||| ||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||  ||||||    
T  39339538 ttgtcatgaagggaatccaaggtgttagcaagatcaaagacggttataatccagcaacatggatgttggaagtcacaaattcatctaaagaagtggaatt 39339637  T
Q  265 ggggattgattttgcagaggtgtaccaaaattcagagttataca 308  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||    
T  39339638 ggggattgattttgtagagttgtacaaaaattcagagttataca 39339681  T

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Target: chr7; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 130 - 308
Target Start/End: Complemental strand, 1084196 - 1084017
Alignment:
Q  130 ttatcttt-tgttaacatttcgataagtacacacttttgtcttgaaggggatccatggtgttagcaagattaaagacggttataatccagcaacgtggat 228  Q
    |||||||| |||||| ||||| |||  ||||| ||||||| | |||||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  1084196 ttatctttatgttaatatttcaatatctacactcttttgtgtcgaagggaatccaaggtgttaccaagattaaagacggttataatccagcaacatggat 1084097  T
Q  229 gttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagaggtgtaccaaaattcagagttataca 308  Q
    ||||||||||||| |||||||||| |||  |||||| |||||||||||||||||||||||| |||| ||| |||||||||    
T  1084096 gttggaagtcacagcttcatctaaggaagtggaattagggattgattttgcagaggtgtacaaaaactcacagttataca 1084017  T

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Target: chr7; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 109 - 308
Target Start/End: Original strand, 39366927 - 39367125
Alignment:
Q  109 tcattattatgtttcaaattgttatct-tttgttaacatttcgata-agtacacacttttgtcttgaaggggatccatggtgttagcaagattaaagacg 206  Q
    ||||| |||||||||||||| ||||||  |||||||| |||| |||  ||||||||  |||||||||||||  | || ||||||||||||||||||||||    
T  39366927 tcatttttatgtttcaaattattatctacttgttaacgtttc-atagtgtacacac--ttgtcttgaagggagtacaaggtgttagcaagattaaagacg 39367023  T
Q  207 gttataatccagcaacgtggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagaggtgtaccaaaattcagagttata 306  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||  ||| ||  ||||||||| ||||||||||||| ||||||||||||||||    
T  39367024 gttataatccagcaacatggatgttggaagtcacaacttcatccaaagaagtggagttacggattgattatgcagaggtgtacaaaaattcagagttata 39367123  T

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Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 39366798 - 39366869
Alignment:
Q  12 agagatatatgtggggccacttggacataattcttccaatttaatcaattactttgaggtaggtacaaaata 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39366798 agagatatatgtggggccacttggacataattcttccaatttaatcaattactttgaggtaggtagaaaata 39366869  T

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Target: chr7; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 39339372 - 39339436
Alignment:
Q  12 agagatatatgtggggccacttggacataattcttccaatttaatcaattactttgaggtaggta 76  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39339372 agagatatatgtagggccacttggacataattcttccaatttaatcaatcactttgaggtaggta 39339436  T

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Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 39588504 - 39588403
Alignment:
Q  197 attaaagacggttataatccagcaacgtggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagaggtgtaccaaaatt 296  Q
    |||||||| || |||||||||||||| ||||| ||||||||||| |||||||||||||||   ||||| ||| |||||||||| |||||||||  |||||    
T  39588504 attaaagatggatataatccagcaacttggattttggaagtcactacttcatctaaagaattagaattaggggttgattttgctgaggtgtacataaatt 39588405  T
Q  297 ca 298  Q
    ||    
T  39588404 ca 39588403  T

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Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 308
Target Start/End: Complemental strand, 39621400 - 39621248
Alignment:
Q  156 tacacacttttgtcttgaaggggatccatggtgttagcaagattaaagacggttataatccagcaacgtggatgttggaagtcacaacttcatctaaaga 255  Q
    |||||||||||||||||||||||||  | ||||| || |||||| |||| |||| ||| |||||| | |||||||||||| | ||  |||||   |||||    
T  39621400 tacacacttttgtcttgaaggggattgaaggtgtcagtaagattgaagatggttgtaacccagcagcttggatgttggaaattacttcttcagaaaaaga 39621301  T
Q  256 aagggaattggggattgattttgcagaggtgtaccaaaattcagagttataca 308  Q
    || | |||||| |||||||||| | || |||||| |||||||||| |||||||    
T  39621300 aatgcaattggagattgatttttctgaagtgtacaaaaattcagaattataca 39621248  T

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Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 1084296 - 1084235
Alignment:
Q  12 agagatatatgtggggccacttggacataattcttccaatttaatcaattactttgaggtag 73  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||  |||||||||||||    
T  1084296 agagatatatgtggggccacttgggcataattcttccaatttaaacacctactttgaggtag 1084235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 39574215 - 39574145
Alignment:
Q  2 gaggaggagcagagatatatgtggggccacttggacataattcttccaatttaatcaattactttgaggta 72  Q
    ||||||||  |||||||||||||||||||||||||| | |||||||  ||||||| || ||||| ||||||    
T  39574215 gaggaggacaagagatatatgtggggccacttggacgtcattcttcacatttaattaaatacttcgaggta 39574145  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 39588688 - 39588618
Alignment:
Q  3 aggaggagcagagatatatgtggggccacttggacataattcttccaatttaatcaattactttgaggtag 73  Q
    |||||||  ||||||||||||||| |||||||||||  ||||||  |||||||| ||||||||| ||||||    
T  39588688 aggaggacaagagatatatgtgggtccacttggacaccattcttgtaatttaattaattactttcaggtag 39588618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 289
Target Start/End: Complemental strand, 39574038 - 39573934
Alignment:
Q  185 ggtgttagcaagattaaagacggttataatccagcaacgtggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagagg 284  Q
    ||||| || ||| ||||||| || || ||||||||||| |||||||||||||| || |  ||| | ||||||| |||| ||| |||| ||||||| ||||    
T  39574038 ggtgtcagtaagcttaaagatggctacaatccagcaacttggatgttggaagttactagctcagcaaaagaaatggaaatggagattaattttgctgagg 39573939  T
Q  285 tgtac 289  Q
    |||||    
T  39573938 tgtac 39573934  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 2896483 - 2896424
Alignment:
Q  188 gttagcaagattaaagacggttataatccagcaacgtggatgttggaagtcacaacttca 247  Q
    ||||| || |||||||| || |||||||||||||| |||||||||||||| |||| ||||    
T  2896483 gttagtaaaattaaagatggctataatccagcaacttggatgttggaagttacaagttca 2896424  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 2159944 - 2159901
Alignment:
Q  194 aagattaaagacggttataatccagcaacgtggatgttggaagt 237  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||    
T  2159944 aagattaaagatggttataatcctgcaacatggatgttggaagt 2159901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 44210238 - 44210194
Alignment:
Q  200 aaagacggttataatccagcaacgtggatgttggaagtcacaact 244  Q
    |||||||| ||||| |||||||| |||||||||||||| ||||||    
T  44210238 aaagacggatataacccagcaacatggatgttggaagttacaact 44210194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 44233259 - 44233215
Alignment:
Q  200 aaagacggttataatccagcaacgtggatgttggaagtcacaact 244  Q
    |||||||| ||||| |||||||| |||||||||||||| ||||||    
T  44233259 aaagacggatataacccagcaacatggatgttggaagttacaact 44233215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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