View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11509_low_2 (Length: 798)
Name: NF11509_low_2
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11509_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 749; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 13 - 781
Target Start/End: Complemental strand, 13850290 - 13849522
Alignment:
| Q |
13 |
caaaggaaccctaaatctctaaaaattaatctaaaatgacaaaatatattttttataatcggtaacaaacattaccctaaaccacttctattctcctaaa |
112 |
Q |
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| T |
13850290 |
caaaggaaccctaaatctctaaaaattaatctaaaatgacaaaatatattttttataatcggtaacaaacattaccctaaaccacttctattctcctaaa |
13850191 |
T |
|
| Q |
113 |
tcatcatcaatatcttactatgtcagtctcgtgtcaagtgtctgcatcagtgattcatatatcaatgtcatcaaaacacaaacacatacaaattgaaacc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13850190 |
tcatcatcaatatcttactatgtcagtctcgtgtcaagtgtctgcatcagtgattcatatatcaatgtcatcaaaacacaaacacatacaaattgaaacc |
13850091 |
T |
|
| Q |
213 |
ctaaatcgcctctattttcttaaagaggagtgctagcaacattttctttccaaaactccctaacattcactatcttattgcatgaaattcatgagggtcc |
312 |
Q |
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| T |
13850090 |
caaaatcggttctattttcttaaagaggagtgctagcaacattttctttccaaaactccctaacattcactatcttattgcatgaaattcgtgagggtcc |
13849991 |
T |
|
| Q |
313 |
cacacattttagatatgggttctacataaggggatgaaatccacatggatttgtttgaaaaagagtatggctagcattcctctttattaaacatcatctg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13849990 |
cacacattttagatatgggttctacataaggggatgaaatccacatggatttgtttgaaaaagagtatggctagcattcctctttattaaacatcatctg |
13849891 |
T |
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| Q |
413 |
tatattcgtgtctgcatcggtattccatgcactatgaaacacggatacgaacacccgacaattctaataatttgagagaatcacatgattcatgttaact |
512 |
Q |
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| T |
13849890 |
tatattcgtgtctgcatcggtattccatgcactatgaaacacggatacgaacacccaacaattctaataatttgagagaatcacatgattcatgttaact |
13849791 |
T |
|
| Q |
513 |
atatgtgtgtcggtgtcgtgtggtgttcgagttcgagacaacatgtgtcagacactgagacatgcctaatctaaggagtgttcataattcatacatcaac |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13849790 |
atatgtgtgtcggtgtcgtgtggtgttcgagttcgagacaacatgtgtcagacactgagacatgcctaatctaaggagtgttcataattcatacatcaac |
13849691 |
T |
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| Q |
613 |
attatcaaaaccaaaacacaaacacataccgatttaaccttgccaaacttctctccatcctccaaaaaccccttcatcacctctgttctaggatgatgca |
712 |
Q |
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| T |
13849690 |
attatcaaaaccaaaacacaaacacataccgatttaaccttgccaaacttctctccatcctccaaaaaccccttcatcacctctgttctaggatgatgca |
13849591 |
T |
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| Q |
713 |
tccacatagtcccatccataaactgcaccccacactcctcacacaccttcacaatctcatcaaactcct |
781 |
Q |
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| T |
13849590 |
tccacatagtcccatccataaactgcaccccacactcctcacacaccttcacaatctcatcaaactcct |
13849522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 597 - 781
Target Start/End: Complemental strand, 13855495 - 13855312
Alignment:
| Q |
597 |
taattcatacatcaacattatcaaaaccaaaacacaaacacataccgatttaaccttgccaaacttctctccatcctccaaaaaccccttcatcacctct |
696 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
13855495 |
taattcatacatcaacattatcaaaac-aaaacacagacacataccgatttaacctttccaaacttctccccatcctccaaaaactccttcatcacctcc |
13855397 |
T |
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| Q |
697 |
gttctaggatgatgcatccacatagtcccatccataaactgcaccccacactcctcacacaccttcacaatctcatcaaactcct |
781 |
Q |
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| T |
13855396 |
gttctcggatgatgcatccacatagtcccatccataaactgcaccccacactcctcacacaccttcacaatctcatcaaactcct |
13855312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 697 - 739
Target Start/End: Complemental strand, 13760408 - 13760366
Alignment:
| Q |
697 |
gttctaggatgatgcatccacatagtcccatccataaactgca |
739 |
Q |
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| T |
13760408 |
gttctaggatgatgcatccacatagtagcatccatatactgca |
13760366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 320
Target Start/End: Complemental strand, 864282 - 864199
Alignment:
| Q |
237 |
gaggagtgctagcaacattttctttccaaaactccctaacattcactatcttattgcatgaaattcatgagggtcccacacatt |
320 |
Q |
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||||||||||| |||| | |||||| || |||| |||||| ||||| |||||||| ||||||||||| |||| ||||||||| |
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| T |
864282 |
gaggagtgctatgaacactctctttcaaacactctctaacactcactctcttattgggtgaaattcatgtgggtaccacacatt |
864199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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