View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11509_low_27 (Length: 258)

Name: NF11509_low_27
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11509_low_27
NF11509_low_27
[»] chr3 (13 HSPs)
chr3 (43-243)||(2506890-2507090)
chr3 (70-218)||(797749-797896)
chr3 (61-238)||(3400774-3400951)
chr3 (107-225)||(9508037-9508155)
chr3 (107-225)||(9516012-9516130)
chr3 (61-226)||(796855-797023)
chr3 (61-226)||(668610-668775)
chr3 (61-227)||(3259730-3259896)
chr3 (151-222)||(3253482-3253553)
chr3 (101-174)||(8994533-8994606)
chr3 (101-164)||(10921532-10921595)
chr3 (108-177)||(10938348-10938417)
chr3 (108-177)||(31287265-31287334)
[»] chr6 (1 HSPs)
chr6 (61-226)||(18714691-18714856)
[»] chr8 (3 HSPs)
chr8 (107-238)||(22931479-22931610)
chr8 (61-238)||(24061068-24061248)
chr8 (107-174)||(24376570-24376637)
[»] scaffold0149 (1 HSPs)
scaffold0149 (101-238)||(25646-25783)
[»] scaffold2125 (1 HSPs)
scaffold2125 (70-227)||(275-432)
[»] scaffold0888 (1 HSPs)
scaffold0888 (44-178)||(2522-2655)
[»] chr2 (1 HSPs)
chr2 (105-170)||(20503559-20503624)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 43 - 243
Target Start/End: Complemental strand, 2507090 - 2506890
Alignment:
Q  43 aaaaagaagacgagcgtcataaattaaaaagtgatacacacatatattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatg 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2507090 aaaaagaagacgagcgtcataaattaaaaagtgatacacacatatattacaaaagagagagggaaatatggctaaaattgtcaattttgtttatagtatg 2506991  T
Q  143 attgtctttctttccctatttctggttgcaacgaaggctgcacgtaagtcatttctaaccatttaaatttttcttctctacttcgcacataatataatat 242  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2506990 attgtctttcttttcctatttctggttgcaacgaaggctgcacgtaagtcatttctaaccatttaaatttttcttctctacttcgcacataatataatat 2506891  T
Q  243 t 243  Q
    |    
T  2506890 t 2506890  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 70 - 218
Target Start/End: Original strand, 797749 - 797896
Alignment:
Q  70 aaagtgatacacacatatattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggtt 169  Q
    ||||||||| | |||||| |||||||  |  |||||||||||||||||||||||||||| |||||||||||||||| | ||||| | |||||||||||||    
T  797749 aaagtgataaatacatatcttacaaacaaaggaggaaaatatggctaaaattgtcaattatgtttatagtatgattatttttctgttcctatttctggtt 797848  T
Q  170 gcaacgaaggctgcacgtaagtcatttctaaccatttaaatttttcttc 218  Q
    ||||||||||||| ||||||| ||||| ||||| |||||| ||||||||    
T  797849 gcaacgaaggctgaacgtaagccatttataacc-tttaaaattttcttc 797896  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 61 - 238
Target Start/End: Complemental strand, 3400951 - 3400774
Alignment:
Q  61 ataaattaaaaagtgatacacacatatattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttcccta 160  Q
    |||||||| |||||  || | |||||||||||||  ||  |||| | ||||||||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  3400951 ataaattataaagttgtaaatacatatattacaagcgaaggagggagatatggctaaatttgtcaattttgtttatagtatgattatctttctatcccta 3400852  T
Q  161 tttctggttgcaacgaaggctgcacgtaagtcatttctaaccatttaaatttttcttctctacttcgcacataatata 238  Q
    ||  ||||||||| ||| |||  ||||||| ||||| |||||||||||| ||||||||||||| ||| ||| ||||||    
T  3400851 ttggtggttgcaatgaatgctaaacgtaagccatttttaaccatttaaaattttcttctctacctcgtacacaatata 3400774  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 225
Target Start/End: Complemental strand, 9508155 - 9508037
Alignment:
Q  107 aatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaaggctgcacgtaagtcatttctaaccattt 206  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||  | | ||||  ||||| |||||| ||    
T  9508155 aatatggctaaaattgtcaattttgtttatagtatgattatctttgtttccctatttttggttgcaacgaagggaggaagtaaaccatttttaaccagtt 9508056  T
Q  207 aaatttttcttctctactt 225  Q
    ||  |||| ||||||||||    
T  9508055 aagattttattctctactt 9508037  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 225
Target Start/End: Complemental strand, 9516130 - 9516012
Alignment:
Q  107 aatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaaggctgcacgtaagtcatttctaaccattt 206  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||  | | ||||  ||||| |||||| ||    
T  9516130 aatatggctaaaattgtcaattttgtttatagtatgattatctttgtttccctatttttggttgcaacgaagggaggaagtaaaccatttttaaccagtt 9516031  T
Q  207 aaatttttcttctctactt 225  Q
    ||  |||| ||||||||||    
T  9516030 aagattttattctctactt 9516012  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 226
Target Start/End: Original strand, 796855 - 797023
Alignment:
Q  61 ataaattaaaaagtgatacacacatatattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttcccta 160  Q
    ||||| || ||||| ||| | ||| ||||||||||  | ||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  796855 ataaactataaagttataaatacaaatattacaaacaaaagagggaaacatggctaaaattgtctattttgtttatagtatgattatctttctttcccta 796954  T
Q  161 tttctggttgcaacgaa---ggctgcacgtaagtcatttctaaccatttaaatttttcttctctacttc 226  Q
    ||||| ||| |||| ||   ||||| |||||||  ||||||||| |||||||  |||||| | ||||||    
T  796955 tttctagttacaacaaaggcggctgaacgtaagctatttctaactatttaaaaatttcttgtttacttc 797023  T

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Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 226
Target Start/End: Original strand, 668610 - 668775
Alignment:
Q  61 ataaattaaaaagtgatacacacatatattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttcccta 160  Q
    |||||||| ||||||||| | |||||||||| |||  | ||||| ||||||| |||||| ||| |||||  ||||||||||| || | ||| ||||||||    
T  668610 ataaattataaagtgataaatacatatattataaacaaaagagggaaatatgactaaaagtgttaatttcatttatagtatggttatttttatttcccta 668709  T
Q  161 tttctggttgcaacgaaggctgcacgtaagtcatttctaaccatttaaatttttcttctctacttc 226  Q
    ||| ||||||||| | || |   ||||||||||||| |||||||||||| ||||||||| ||||||    
T  668710 tttatggttgcaatgcagacccaacgtaagtcatttttaaccatttaaaattttcttctttacttc 668775  T

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Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 227
Target Start/End: Complemental strand, 3259896 - 3259730
Alignment:
Q  61 ataaattaaaaagtgatacacacatatattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttcccta 160  Q
    |||||||| ||||||||| | ||||||||||||||  |  || | | | ||||||||| |||||| | |||||| |||| ||||| ||||||| |||  |    
T  3259896 ataaattataaagtgataaatacatatattacaaataaaggaaggatacatggctaaatttgtcattgttgtttgtagtgtgattatctttctatcctca 3259797  T
Q  161 tttctggttgcaacgaaggctgcacgtaagtcatttctaaccatttaaatttttcttctctacttcg 227  Q
    ||||||||||||  |||  ||  ||||||| |||||||||||||||||| |||||||||||||||||    
T  3259796 tttctggttgcagagaattctcaacgtaagccatttctaaccatttaaaattttcttctctacttcg 3259730  T

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Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 3253553 - 3253482
Alignment:
Q  151 tctttccctatttctggttgcaacgaaggctgcacgtaagtcatttctaaccatttaaatttttcttctcta 222  Q
    ||||||| ||||||||||||||||||| |||  |||||||||||||||||||||||||| ||||||||||||    
T  3253553 tctttccttatttctggttgcaacgaatgctcaacgtaagtcatttctaaccatttaaaattttcttctcta 3253482  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 8994606 - 8994533
Alignment:
Q  101 gaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaac 174  Q
    |||| ||| ||| ||| ||||||||||||||||| | |||||||| |||||||||||  |||| ||||||||||    
T  8994606 gagggaaacatgactacaattgtcaattttgtttgtggtatgattatctttctttccgaatttatggttgcaac 8994533  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 10921595 - 10921532
Alignment:
Q  101 gaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttc 164  Q
    |||||||||||| ||||||||||||| ||| |||||  ||||||| || |||||||||| ||||    
T  10921595 gaggaaaatatgactaaaattgtcaagtttatttatgttatgattatcattctttccctctttc 10921532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 10938417 - 10938348
Alignment:
Q  108 atatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaa 177  Q
    |||||||||||||| |||| |||||||||  ||||||| || || ||||| | ||||| |||||||||||    
T  10938417 atatggctaaaattatcaagtttgtttatgttatgattatcattatttccttctttctagttgcaacgaa 10938348  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 31287265 - 31287334
Alignment:
Q  108 atatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaa 177  Q
    ||||||||||||||||||| ||| |||||  ||||||| |||||||||| | |||| | ||| |||||||    
T  31287265 atatggctaaaattgtcaagtttatttatcttatgattatctttctttctccatttttagtttcaacgaa 31287334  T

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Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 61 - 226
Target Start/End: Original strand, 18714691 - 18714856
Alignment:
Q  61 ataaattaaaaagtgatacacacatatattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttcccta 160  Q
    |||||| | ||||||||| | ||||||||||||||  |  |||| | |||||||||||||| ||||||||||||||| ||||||| ||||| ||||| ||    
T  18714691 ataaataataaagtgataaatacatatattacaaacaaaggagggagatatggctaaaattatcaattttgtttataatatgattatctttttttcctta 18714790  T
Q  161 tttctggttgcaacgaaggctgcacgtaagtcatttctaaccatttaaatttttcttctctacttc 226  Q
    ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| |||||||    
T  18714791 tttctggttgcaacgaatgctggaggtaagtcatttctaaccatttaaatttttcttcactacttc 18714856  T

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Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 107 - 238
Target Start/End: Complemental strand, 22931610 - 22931479
Alignment:
Q  107 aatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaaggctgcacgtaagtcatttctaaccattt 206  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| | ||||  ||||| |||||||||    
T  22931610 aatatggctaaaattgccaattttgtttatagtatgattatctttctttccctatttttggttgcaacaaaggctgaatgtaaaacatttttaaccattt 22931511  T
Q  207 aaatttttcttctctacttcgcacataatata 238  Q
    ||| |||||||||||||||| |||| ||||||    
T  22931510 aaaattttcttctctacttcccacacaatata 22931479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 61 - 238
Target Start/End: Original strand, 24061068 - 24061248
Alignment:
Q  61 ataaattaaaaagtgatacacacatatattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttcccta 160  Q
    ||||||||  |||| ||| | ||||||||||||||  |  |||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  24061068 ataaattatgaagttataaatacatatattacaaacaaaggagggaaatatggctaaaattgtcaattttctttatagtatgattatctttctttcccta 24061167  T
Q  161 tttctggttgcaacgaaggctg---cacgtaagtcatttctaaccatttaaatttttcttctctacttcgcacataatata 238  Q
    ||||| |||||||||||| |||   || ||||| ||||| ||||||||||||  |||||| | ||||||  ||||||||||    
T  24061168 tttctagttgcaacgaagtctgaaccaggtaagccatttttaaccatttaaaactttcttatgtacttcatacataatata 24061248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 24376570 - 24376637
Alignment:
Q  107 aatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaac 174  Q
    |||||||||||||||||||| | |||||||  ||| ||| |||| ||||| |||||||| ||||||||    
T  24376570 aatatggctaaaattgtcaagtatgtttatgttattattatcttcctttctctatttcttgttgcaac 24376637  T

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Target: scaffold0149 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 25646 - 25783
Alignment:
Q  101 gaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttgcaacgaaggctgcacgtaagtcatttctaa 200  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||   |||| | |||||||||||||||||    
T  25646 gagggaaatatggttaaaattgtcatttttgtttatagtatgattatctttctttccctatctctggttgcaatagaggccggacgtaagtcatttctaa 25745  T
Q  201 ccatttaaatttttcttctctacttcgcacataatata 238  Q
    ||||||||| ||||| ||||||||||  ||||||||||    
T  25746 ccatttaaaattttcctctctacttcatacataatata 25783  T

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Target: scaffold2125 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold2125
Description:

Target: scaffold2125; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 70 - 227
Target Start/End: Original strand, 275 - 432
Alignment:
Q  70 aaagtgatacacacatatattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggtt 169  Q
    ||||||||| | ||||||||||||||  | ||||  | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||    
T  275 aaagtgataaatacatatattacaaacaaaagagagatatatggctaaaattgtcaattttatttatagtatgattatctttctttccctatttctagtt 374  T
Q  170 gcaacgaaggctgcacgtaagtcatttctaaccatttaaatttttcttctctacttcg 227  Q
    | ||| || |||  | ||||| ||||||| |||||||||| ||||||||| |||||||    
T  375 gaaacaaatgctcaatgtaagccatttcttaccatttaaaattttcttctttacttcg 432  T

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Target: scaffold0888 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 178
Target Start/End: Original strand, 2522 - 2655
Alignment:
Q  44 aaaagaagacgagcgtcataaattaaaaagtgatacacacatatattacaaaagagagaggaaaatatggctaaaattgtcaattttgtttatagtatga 143  Q
    ||||||||| |||| | |||||||| |||  |||| | |||||| |||||||  |  ||||||| |||| ||||| |||| |||||| ||||||||||||    
T  2522 aaaagaagatgagctttataaattataaaacgatatatacatatgttacaaacaaaggaggaaa-tatgactaaagttgttaattttatttatagtatga 2620  T
Q  144 ttgtctttctttccctatttctggttgcaacgaag 178  Q
    || |||||||||  ||||||| |||||||||||||    
T  2621 ttatctttctttttctatttccggttgcaacgaag 2655  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 20503559 - 20503624
Alignment:
Q  105 aaaatatggctaaaattgtcaattttgtttatagtatgattgtctttctttccctatttctggttg 170  Q
    |||| |||||||||||| |||| |||||||||| ||||||  | ||| ||||||||||||| ||||    
T  20503559 aaaaaatggctaaaattctcaaatttgtttatattatgatcctttttatttccctatttcttgttg 20503624  T

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