View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11509_low_31 (Length: 240)
Name: NF11509_low_31
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11509_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 48572245 - 48572467
Alignment:
| Q |
1 |
cctttttcattcttcttccatcttcttttcttcaacaatttctatcaacaattccgtaatgcaacatcaaggaggtcaacacttaaaagttaaaacaatc |
100 |
Q |
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| T |
48572245 |
cctttttcattcttcttccatcttcttttcttcaacaatttctatcaacaattccgtaatgcaacatcaaggaggtcaacacttaaaagttaaaacaatc |
48572344 |
T |
|
| Q |
101 |
tcttaattcttaaaaaatgtaccctttacacatgtttgtcccaaatctatagtgaaaattgaaaaatcaaattaacccacaaacaattttaaatcaataa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48572345 |
tcttcattcttaaaaaatgtaccctttacacatgtttgtcccaaatctatagtgaaaattgaaaaatcaaattaacccacaaacaattttaaatcaataa |
48572444 |
T |
|
| Q |
201 |
taataaactgtcaatttgttctt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
48572445 |
taataaactgtcaatttgttctt |
48572467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26218165 - 26217926
Alignment:
| Q |
1 |
cctttttcattcttcttccatcttcttttcttcaacaatttctatcaacaattcc--gta---------------atgcaacatcaaggaggtcaacact |
83 |
Q |
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|||||| |||||||||||||| || |||||||||||||||||||||||||||||| ||| | |||||| ||| |||||| ||| | |
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| T |
26218165 |
ccttttccattcttcttccatgttgttttcttcaacaatttctatcaacaattccaggtaactgaagctagttttacgcaacaccaacgaggtctacaat |
26218066 |
T |
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| Q |
84 |
taaaagttaaaacaatctcttaattcttaaaaaatgtaccctttacacatgtttgtcccaaatctatagtgaaaattgaaaaatcaaattaacccacaaa |
183 |
Q |
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|| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26218065 |
tataagttaatacaatctcttcattcttaaaaaatgtaccctttactcatgtttgtcccaaatctatagtgaaaattgaaaaatcaaattaaaccacaaa |
26217966 |
T |
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| Q |
184 |
caattttaaatcaataataataaactgtcaatttgttctt |
223 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| |
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| T |
26217965 |
caattttaaatcaataatgataaactgtcaatttgttctt |
26217926 |
T |
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