View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11509_low_32 (Length: 237)
Name: NF11509_low_32
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11509_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 38215272 - 38215490
Alignment:
| Q |
1 |
tataacatactgcaagcttgtcttccctgcaccttcaattctctcttcctcttcattaatccaccttgtgatcctatgaacaaaattttctattaagttt |
100 |
Q |
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| T |
38215272 |
tataacatactgcaagcttgtcttccctgcaccttcaattctctcttcctcttcattaatccaccttgtgatcctatgaacaaaattttctattaagttt |
38215371 |
T |
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| Q |
101 |
ccaattttattgaagggaagtatatattttgcatacaaccaagtaacttacctctctcttaaatagcttgcattagcaaaaaatattggtgcatcaattt |
200 |
Q |
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| T |
38215372 |
ccaattttattgaagggaagtatatattttgcatacaaccaagtaacttacctctctcttaaatagcttgcattagcaaaaaatattggtgcatcaattt |
38215471 |
T |
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| Q |
201 |
caagaattagtattccagg |
219 |
Q |
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| T |
38215472 |
caagaattagtattccagg |
38215490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 31750614 - 31750532
Alignment:
| Q |
1 |
tataacatactgcaagcttgtcttccctgcaccttcaattctctcttcctcttcattaatccaccttgtgatcctatgaacaa |
83 |
Q |
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| T |
31750614 |
tataacataattcaaaattgtctcccctgtatctttaattctatcttcctcttcatcgatccaccttgagatcctatgaacaa |
31750532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 31750449 - 31750380
Alignment:
| Q |
147 |
cttacctctctcttaaatagcttgcattagcaaaaaatattggtgcatcaatttcaagaattagtattcc |
216 |
Q |
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| T |
31750449 |
cttacctttctcttaaatagcttgcattggcaaagtaaattggtgcatcaatctttagaattagaattcc |
31750380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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