View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11509_low_35 (Length: 220)
Name: NF11509_low_35
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11509_low_35 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 46268274 - 46268337
Alignment:
| Q |
113 |
gtgatttctccatcttcatcttcatgaccaagctcatcatgagacgatggagcaaacgcacaca |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46268274 |
gtgatttctccatcttcatcttcatgaccaagctcatcatgagacgatggagcaaacacacaca |
46268337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 46268527 - 46268561
Alignment:
| Q |
172 |
acacaaaaatccccatggacccgcaagagaagaaa |
206 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46268527 |
acacaaaaatccctatggacccgcaagagaagaaa |
46268561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University