View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11509_low_4 (Length: 541)
Name: NF11509_low_4
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11509_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 38953732 - 38954258
Alignment:
| Q |
1 |
tttttgaggttttttaatccgagaatgaggaagggttgcttgtgtttatatggagtatttggaagagcagaagtgcgacaacgtgggaaatcaaacggat |
100 |
Q |
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| T |
38953732 |
tttttgaggttttttcatcagagaatgaggaagtgttgcttgtgtttatatggagtatttggaagagcagaagtgcgacaacgtgggaaatcaaacggat |
38953831 |
T |
|
| Q |
101 |
agaccagctgattttgttcattgcagcagaaggtttgttggaggagttgctaaaagcttgtgatacatgtttgcattggactagttctagtaagattgtg |
200 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38953832 |
agaccagctgaatttgttcattgcagcagaatgtttgttggaggagttgctacaagcttgtgatacatgtttgcattggactagttctagtaagattgtg |
38953931 |
T |
|
| Q |
201 |
attcgaaaaacccacctcattcaagagttgttgatcgcactgagcttggcaacattcttaataagtagatttatctttacttctcattttaacaatctta |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38953932 |
attcgaaaaacccacctcattctagagttgttgatcgcactgagcttggcaacattcttaataagtagatttatctttacttctcattttaacaatctta |
38954031 |
T |
|
| Q |
301 |
tgtgaagtaattttcacctttattatgatattccagcatgtattatgttttaattttcaatgagatggattagccatttatcgtgtgtctgtcaaatgga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38954032 |
tgtgaagtaattttcacctttattatgatattccagcatgtattatgttttaattttcaatgagatggattagccatttatcgtgtgtctgtcaaatgga |
38954131 |
T |
|
| Q |
401 |
ccctttattttattttttacgattaaaatggacctacttgatacaccacattcaattcaattgtgt----aagaaataaataaaggaatgaaactcgagt |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38954132 |
ccctttattttattttttacgattaaaatggacctacttgatacaccacattcaattcaattgtgtaagaaagaaataaataaaggaatgaaactcgagt |
38954231 |
T |
|
| Q |
497 |
acactaccgcgaggaacacgttacacg |
523 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
38954232 |
acactaccgcgaggaacacgttacacg |
38954258 |
T |
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