View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11509_low_8 (Length: 436)
Name: NF11509_low_8
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11509_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 132 - 331
Target Start/End: Complemental strand, 35678868 - 35678669
Alignment:
| Q |
132 |
gttgattccatttcatatgatatattttagagtgaagatccaatttagtccttcacaattttctcgtgacccaatttaatctataaaacaaaattgaaac |
231 |
Q |
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| T |
35678868 |
gttgattccatttcatatgatatattttagagtgaagatccaatttagtccttcacaattttctcgtgacccaatttaatctataagacaaaattgaaac |
35678769 |
T |
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| Q |
232 |
tcaaagtagtctctaacctttacatacgaaggacaaataagtcaatttattacaatgaattgtctagttcctctcaaaattgaagggtcggaatgagtta |
331 |
Q |
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| T |
35678768 |
tcaaagtagtctctaacttttacacacgaaggacaaataagtccatttattacaatgaattgtctagttcctctcaaaattaaagggtcagaatgagtta |
35678669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 374 - 436
Target Start/End: Complemental strand, 35678621 - 35678559
Alignment:
| Q |
374 |
tattattatgcttatatcaaaattctcatttcacattcacacagacacagactacagttccct |
436 |
Q |
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| T |
35678621 |
tattattatgcttatatcaaaattctcatttcacattcacacagacacagactatagttccct |
35678559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 35678978 - 35678930
Alignment:
| Q |
13 |
tcatcatatttatccttgaaaattaatgatttgataatacaaaaccctc |
61 |
Q |
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| T |
35678978 |
tcataatatttatccttgaaaattaatgatttgataatacaaaaacctc |
35678930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 21206812 - 21206863
Alignment:
| Q |
160 |
agagtgaagatccaatttagtccttcacaattttctcgtgacccaatttaat |
211 |
Q |
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| T |
21206812 |
agagtgaagactcaatttagtccttcacagttttcccgtggcccaatttaat |
21206863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 39411047 - 39411095
Alignment:
| Q |
161 |
gagtgaagatccaatttagtccttcacaattttctcgtgacccaattta |
209 |
Q |
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| T |
39411047 |
gagtaaagatccaatttaagccttcacaattttctcgcaacccaattta |
39411095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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