View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11509_low_9 (Length: 415)
Name: NF11509_low_9
Description: NF11509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11509_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 224 - 399
Target Start/End: Original strand, 14545594 - 14545769
Alignment:
| Q |
224 |
gttattttccaaccaaaatttttccaactgcatctcatcccgcaatttttatgtttcaccatcttctcaccaatgttaagcataatcaatttctaggttg |
323 |
Q |
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| T |
14545594 |
gttattttccaaccaaaatttttccaactgcatctcatcccgcaatttttatgtttcaccatcttctcaccaatgttaagcataatcaatttctagattg |
14545693 |
T |
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| Q |
324 |
ttttcatgggtaagttcttcttcttaatttattttttatcaaagtgtgtttctatggagtgtaaaaaacttgttgt |
399 |
Q |
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| T |
14545694 |
ttttcatgggtaagttcttcttcttaatttattttttatcaaagtgtgtttctatggagtgtaaaaaacttgttgt |
14545769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 14545378 - 14545546
Alignment:
| Q |
11 |
atgaagagtgagagtttgcaaatgtaattgcatatcttagaggaagcatgagtgtatacagagcaaatcttagatggtcacatgaccaagaaattgagtt |
110 |
Q |
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| T |
14545378 |
atgaagagtgagagtttgcaaatgtaattgcatatcttagaggaagcatgagtgtatacagagcaaatcttagatggtcacatgaccaagaaattgagtt |
14545477 |
T |
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| Q |
111 |
ggtcacgaccaatcaaaacttgacatccgatacacataaagtaaataaatataatagggagagagagag |
179 |
Q |
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| T |
14545478 |
ggtcacgaccaatcaaaacttgacatccgatacacataaagtaaataaatataatagggagagagagag |
14545546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 269 - 353
Target Start/End: Complemental strand, 14546555 - 14546471
Alignment:
| Q |
269 |
tttttatgtttcaccatcttctcaccaatgttaagcataatcaatttctaggttgttttcatgggtaagttcttcttcttaattt |
353 |
Q |
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| T |
14546555 |
tttttatgtttcaccatcttctcaccaatgttaagcataatcaatttctaggttgttttcatgggtaagttcttcttcttaattt |
14546471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 380
Target Start/End: Original strand, 14503062 - 14503157
Alignment:
| Q |
286 |
cttctcaccaatgtt-aagcataatcaatttctaggttgttttcatgggtaagttcttcttctt-aatttattttttatcaaagtgtgtttctatgg |
380 |
Q |
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| T |
14503062 |
cttctcaccaatgttcaagcataatcaatttctagattattttcat-ggtaaattcttctgcttcatttttttttttattgaagtgtgtttctatgg |
14503157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 176
Target Start/End: Original strand, 14502859 - 14502949
Alignment:
| Q |
87 |
gtcacatgaccaagaaattg-agttggtcacgaccaatcaaaacttgacatccgatacacataaagtaaataaatataatagggagagaga |
176 |
Q |
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| T |
14502859 |
gtcacaagaccaaaaaattgcaattggtcaaaaccaatcaacacttgacatctcatacacataaagtacataaatataataaagagagaga |
14502949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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