View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1150_high_15 (Length: 454)
Name: NF1150_high_15
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 172 - 451
Target Start/End: Complemental strand, 3895418 - 3895139
Alignment:
| Q |
172 |
cctctgtcgccgacccagcaacctcccccgtcttctctgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttct |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895418 |
cctctgtcgccgacccagcaacctcccccgtcttctccgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttct |
3895319 |
T |
|
| Q |
272 |
ttcctttgcatcataagcataatctctagctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagtctcttatactc |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895318 |
ttcctttgcatcataagcataatctctagctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagtctcttatactc |
3895219 |
T |
|
| Q |
372 |
tctccagcattctctgcagcatcctttgttctctcctttgcatcataagcataatctctagctttctccccagcactctc |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| |
|
|
| T |
3895218 |
tctccagcattctctgcagcatcctttgttctctcctttgcatcataagcataatctctagccttctctccagcattctc |
3895139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 393 - 454
Target Start/End: Complemental strand, 3895329 - 3895268
Alignment:
| Q |
393 |
tcctttgttctctcctttgcatcataagcataatctctagctttctccccagcactctctgc |
454 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895329 |
tccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
3895268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 3895079 - 3895016
Alignment:
| Q |
259 |
cttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
322 |
Q |
| |
|
|||| |||||||| || ||| | ||||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
3895079 |
cttcattggttctgtcttttacctcataagcatagtctctagctttctctccagcattctctgc |
3895016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 454
Target Start/End: Complemental strand, 3895056 - 3895016
Alignment:
| Q |
414 |
tcataagcataatctctagctttctccccagcactctctgc |
454 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
3895056 |
tcataagcatagtctctagctttctctccagcattctctgc |
3895016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University