View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1150_high_2 (Length: 819)

Name: NF1150_high_2
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1150_high_2
NF1150_high_2
[»] chr3 (1 HSPs)
chr3 (105-790)||(53292434-53293120)


Alignment Details
Target: chr3 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 105 - 790
Target Start/End: Complemental strand, 53293120 - 53292434
Alignment:
Q  105 caatttggagcaatgatttcggatcaaaaatcactccttttaaagagaaataatgttaatagcaaaactctannnnnnnnnnn-atcttaaagatagatg 203  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||    
T  53293120 caatttggagtgatgatttcggatcaaaaatcactccttttaaagagaaataatgttaatagcaaaactctattttttttttttatcttaaagatagatg 53293021  T
Q  204 ctaagtgttaataattgttagcagaaaaggcggaaatgttagttttctgaaatcgaattcgggacctccaacttaccatactagtgtctggacccgcatt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53293020 ctaagtgttaataattgttagcagaaaaggcggaaatgttagttttctgaaatcgaattcgggacctccaacttaccatactagtgtctggacccgcatt 53292921  T
Q  304 gaaagttaacgttgaagaagccacacattatagcttccacagtgggttggacgtgatttaagtatattctaagcatggcaataactagaataagtagtac 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53292920 gaaagttaacgttgaagaagccacacattatagcttccacagtgggttggacgtgatttaagtatattctaagcatggcaataactagaataagtagtac 53292821  T
Q  404 gtaaaacacttgaatgctactttcatatgtccattttcagttgtcgtttttgtaatcaattttaacaatatttcaaaagttatcaagcaaacccccaaaa 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53292820 gtaaaacacttgaatgctactttcatatgtccattttcagttgtcgtttttgtaatcaattttaacaatatttcaaaagttatcaagcaaacccccaaaa 53292721  T
Q  504 atcatgcaaatataaagttcgtatatttataactatagttaagctacttttacatatttcccttcaattatgtaagtttttgagcttaatgaccaagaaa 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53292720 atcatgcaaatataaagttcgtatatttataactatagttaagctacttttacatatttcccttcaattatgtaagtttttgagcttaatgaccaagaaa 53292621  T
Q  604 taacnnnnnnnncaaggattctaagtcggagtacatcagctaggcgagccaaagcgagtgagaagcgaatcataatagaaaatttcaaagttgtatgaca 703  Q
    ||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53292620 taacaaaaaaaacaaggattctaagtcggagtacatcagctaggcgagccaaagcgagtgagaagcgaatcataatagaaaatttcaaagttgtatgaca 53292521  T
Q  704 agaaaagtcgttaggggagctggagcgagagaccccatatagtttacgagaatatgaagagcatattcgctaagcggacaacacatc 790  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53292520 agaaaagtcgttaggggagctggagcgagagaccccatatagtttacgagaatatgaagagcatattcgctaagcggacaacacatc 53292434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University