View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_high_21 (Length: 424)
Name: NF1150_high_21
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 30 - 411
Target Start/End: Original strand, 4265587 - 4265968
Alignment:
| Q |
30 |
ccattgcactttctcacttttatcctcttttgggtcatctcatttggcctcatgattctcacaagccaatcatcaaattcattaagggaaacactctttc |
129 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
4265587 |
ccattgcactttcttacttttatcctcttttgggtcatctcacttggcctaatgattctcacaagccaatcatcaaattcatcaagggaaaccctctttc |
4265686 |
T |
|
| Q |
130 |
acttaccatagctgaatctgatgctgatttcaatcatctttcaggtaagaatcttactaaagctaaacaaattcatgatcttttacctaacttgaatatt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4265687 |
acttaccatagctgaatctgatgctgatttcaatcatctttcaggtaagaatcttactgaagctaaacaaattcatgatcttttacctaacttgaatatt |
4265786 |
T |
|
| Q |
230 |
tcacatgaccaagcttctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggta |
329 |
Q |
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|| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4265787 |
tctcatgatcaagcttctattttggctcttcaagttactctttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggta |
4265886 |
T |
|
| Q |
330 |
aaacttcaacttcttttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcacccct |
411 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
4265887 |
aaacttcaacttcttttatcaaatcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagaattacccct |
4265968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 30 - 411
Target Start/End: Original strand, 4260041 - 4260422
Alignment:
| Q |
30 |
ccattgcactttctcacttttatcctcttttgggtcatctcatttggcctcatgattctcacaagccaatcatcaaattcattaagggaaacactctttc |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |
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| T |
4260041 |
ccattgcactttctcacttttatcctcttttgggtcatctcatttggcctcatgattctcacaagccaatcattaaattcatcaaaggaaacactctttc |
4260140 |
T |
|
| Q |
130 |
acttaccatagctgaatctgatgctgatttcaatcatctttcaggtaagaatcttactaaagctaaacaaattcatgatcttttacctaacttgaatatt |
229 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||| | || |||||||||||| || |||||| ||| ||||||||| |||||||||||||||||||| |
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| T |
4260141 |
acttaccgtagctgaatctcatgctgatttcaatcatttctctggtaagaatctttctgaagctacacagattcatgattttttacctaacttgaatatt |
4260240 |
T |
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| Q |
230 |
tcacatgaccaagcttctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggta |
329 |
Q |
| |
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|| ||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260241 |
tctcatgatcaagcttcttttttggctcttcaagttactttttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggta |
4260340 |
T |
|
| Q |
330 |
aaacttcaacttcttttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcacccct |
411 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
4260341 |
aaacttcaacttcttttatcaaatcttgggcttacctatgtagaaagcttgaaattgaagtatctgaattagtattacccct |
4260422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 36 - 411
Target Start/End: Complemental strand, 4290130 - 4289755
Alignment:
| Q |
36 |
cactttctcacttttatcctcttttgggtcatctcatttggcctcatgattctcacaagccaatcatcaaattcattaagggaaacactctttcacttac |
135 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||| | |||||||||||||||||||| |
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| T |
4290130 |
cactttctcacttttatcctcttttgggtcatctcatttggcctaatgattctcacaaaccaatcattaaattcataagaggaaacactctttcacttac |
4290031 |
T |
|
| Q |
136 |
catagctgaatctgatgctgatttcaatcatctttcaggtaagaatcttactaaagctaaacaaattcatgatcttttacctaacttgaatatttcacat |
235 |
Q |
| |
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||||||||||||| ||||||||||||||||| | || |||||||||||| || |||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
4290030 |
catagctgaatctcatgctgatttcaatcatttatctggtaagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcat |
4289931 |
T |
|
| Q |
236 |
gaccaagcttctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaactt |
335 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289930 |
gatcaagcttctgttttggctcttcaagttaccatttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaactt |
4289831 |
T |
|
| Q |
336 |
caacttcttttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcacccct |
411 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289830 |
caacttcttttatcaaatcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcacccct |
4289755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 45 - 398
Target Start/End: Complemental strand, 4298705 - 4298352
Alignment:
| Q |
45 |
acttttatcctcttttgggtcatctcatttggcctcatgattctcacaagccaatcatcaaattcattaagggaaacactctttcacttaccatagctga |
144 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||||| |
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| T |
4298705 |
acttttatcctcttttgggtcatctcacttggcctaatgattctcacaaaccaatcatcaaattcttcaagagaaacactctttcacttaccatagctga |
4298606 |
T |
|
| Q |
145 |
atctgatgctgatttcaatcatctttcaggtaagaatcttactaaagctaaacaaattcatgatcttttacctaacttgaatatttcacatgaccaagct |
244 |
Q |
| |
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||||||| ||||||||||| |||| || |||||||||| | || |||||| |||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
4298605 |
atctgattctgatttcaattatctatctggtaagaatccttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaagct |
4298506 |
T |
|
| Q |
245 |
tctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttctt |
344 |
Q |
| |
|
| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4298505 |
tatgttttggctcttcaagttaccgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttctt |
4298406 |
T |
|
| Q |
345 |
ttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaat |
398 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| ||| ||| ||||||||| |
|
|
| T |
4298405 |
ttatcaaatcttgggcttacctatgtagaaatattggaaaggaaatatctgaat |
4298352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 143 - 327
Target Start/End: Complemental strand, 4285293 - 4285109
Alignment:
| Q |
143 |
gaatctgatgctgatttcaatcatctttcaggtaagaatcttactaaagctaaacaaattcatgatcttttacctaacttgaatatttcacatgaccaag |
242 |
Q |
| |
|
|||||| |||||| |||||||||| | || | |||||||||| | |||| | |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4285293 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaag |
4285194 |
T |
|
| Q |
243 |
cttctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatgg |
327 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
4285193 |
ctactgttttggctcttcaagttactgtttttccaaactatggattttcaatgggcattacttcacatcatgctgttttagatgg |
4285109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 4285111 - 4285056
Alignment:
| Q |
356 |
tgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcacccct |
411 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
4285111 |
tgggcttacctatgtagaaagcttgaaaatgaagtttctgaattagaatcacccct |
4285056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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