View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1150_high_23 (Length: 388)

Name: NF1150_high_23
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1150_high_23
NF1150_high_23
[»] chr2 (2 HSPs)
chr2 (17-134)||(8019528-8019645)
chr2 (246-359)||(8019400-8019513)
[»] chr3 (14 HSPs)
chr3 (20-89)||(28183439-28183508)
chr3 (17-163)||(17746683-17746838)
chr3 (17-163)||(19048003-19048158)
chr3 (17-66)||(28081438-28081487)
chr3 (17-89)||(28147234-28147307)
chr3 (17-82)||(27974226-27974291)
chr3 (105-152)||(28001872-28001919)
chr3 (33-80)||(28482365-28482412)
chr3 (33-80)||(28511177-28511224)
chr3 (20-66)||(27918067-27918113)
chr3 (17-58)||(28053208-28053249)
chr3 (17-58)||(28063633-28063674)
chr3 (17-61)||(18026977-18027021)
chr3 (17-61)||(27392719-27392763)
[»] scaffold0257 (1 HSPs)
scaffold0257 (37-89)||(17021-17073)
[»] chr6 (1 HSPs)
chr6 (198-253)||(12217255-12217309)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 8019645 - 8019528
Alignment:
Q  17 tccacattccccctcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagtacaatagagatggtaaaaggttgttga 116  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019645 tccacattcctcctcaattcctgcaataaataaatgggaaataaacacatgcatatgataagaataaccaagtacaatagagatggtaaaaggttgttga 8019546  T
Q  117 gatatttgatatactaga 134  Q
    ||||||||||||||||||    
T  8019545 gatatttgatatactaga 8019528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 246 - 359
Target Start/End: Complemental strand, 8019513 - 8019400
Alignment:
Q  246 aggttttaactaattgcatatgattatgaaagttgttagtccttaacaattgtatgattttaggctgatatcactggtctggtatatgcacaaagtgttg 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  8019513 aggttttaactaattgcatatgattatgaaagttgttagtccttaacgattgtatgattttaggctaatatcactagtctggcatatgcacaaagtgttg 8019414  T
Q  346 tcgaaacttgtagc 359  Q
    |||||| |||||||    
T  8019413 tcgaaagttgtagc 8019400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 28183508 - 28183439
Alignment:
Q  20 acattccccctcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagt 89  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||    
T  28183508 acattcccactcaattcctgcaataaatgaatgggaaataaacacatgcataaaataagaataacaaagt 28183439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 17746683 - 17746838
Alignment:
Q  17 tccacattccccctcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagt--------acaatagagatgg-taaaa 107  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||||||||   |||  ||||||||||| ||||        |||||||||||   |||||    
T  17746683 tccacatccccactcaattcctgcaataaatgaatgagaaataaacacacatataaaataagaataacaaagtctgtaagtacaatagagatatataaaa 17746782  T
Q  108 ggttgttgagatatttgatatactagagtgtttattcaaactcacaagttctctct 163  Q
    ||||||  ||||||||||||||| |||||||| |||||||||||||  ||||||||    
T  17746783 ggttgtgaagatatttgatatacgagagtgttgattcaaactcacagtttctctct 17746838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 19048003 - 19048158
Alignment:
Q  17 tccacattccccctcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagt--------acaatagagatgg-taaaa 107  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||||||||   |||  ||||||||||| ||||        |||||||||||   |||||    
T  19048003 tccacatccccactcaattcctgcaataaatgaatgagaaataaacacacatataaaataagaataacaaagtctgtaagtacaatagagatatataaaa 19048102  T
Q  108 ggttgttgagatatttgatatactagagtgtttattcaaactcacaagttctctct 163  Q
    ||||||  ||||||||||||||| |||||||| |||||||||||||  ||||||||    
T  19048103 ggttgtgaagatatttgatatacgagagtgttgattcaaactcacagtttctctct 19048158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 28081487 - 28081438
Alignment:
Q  17 tccacattccccctcaattcctgcaataaatgaatgggaaataaacacat 66  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28081487 tccacattcccactcaattcctgcaataaatgaatgggaaataaacacat 28081438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 28147307 - 28147234
Alignment:
Q  17 tccacattccccctcaattcctgcaataaatgaatgggaaataaacac-atgcatatgataagaataaccaagt 89  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||  ||||||||||| ||||    
T  28147307 tccacattcccactcaattcctgtaataaatgaatgggaaataaacacaatgcataaaataagaataacaaagt 28147234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 27974291 - 27974226
Alignment:
Q  17 tccacattccccctcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaata 82  Q
    ||||||||||| |||||||||| || |||| ||||| ||||||||||||||||||  |||||||||    
T  27974291 tccacattcccactcaattcctacagtaaacgaatgagaaataaacacatgcataaaataagaata 27974226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 28001919 - 28001872
Alignment:
Q  105 aaaggttgttgagatatttgatatactagagtgtttattcaaactcac 152  Q
    ||||||||| ||||||||| ||||||||||||||  ||||||||||||    
T  28001919 aaaggttgtggagatatttaatatactagagtgtcgattcaaactcac 28001872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 28482365 - 28482412
Alignment:
Q  33 attcctgcaataaatgaatgggaaataaacacatgcatatgataagaa 80  Q
    |||||| |||||||||||||||||||||||||||| |||  |||||||    
T  28482365 attcctacaataaatgaatgggaaataaacacatgtataaaataagaa 28482412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 28511177 - 28511224
Alignment:
Q  33 attcctgcaataaatgaatgggaaataaacacatgcatatgataagaa 80  Q
    |||||| |||||||||||||||||||||||||||| |||  |||||||    
T  28511177 attcctacaataaatgaatgggaaataaacacatgtataaaataagaa 28511224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 27918113 - 27918067
Alignment:
Q  20 acattccccctcaattcctgcaataaatgaatgggaaataaacacat 66  Q
    |||||||| ||||| ||||| |||||| |||||||||||||||||||    
T  27918113 acattcccactcaaatcctgtaataaacgaatgggaaataaacacat 27918067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 28053249 - 28053208
Alignment:
Q  17 tccacattccccctcaattcctgcaataaatgaatgggaaat 58  Q
    |||||| |||| |||||||||||||||||||||||| |||||    
T  28053249 tccacaatcccactcaattcctgcaataaatgaatgtgaaat 28053208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 28063674 - 28063633
Alignment:
Q  17 tccacattccccctcaattcctgcaataaatgaatgggaaat 58  Q
    |||||| |||| |||||||||||||||||||||||| |||||    
T  28063674 tccacaatcccactcaattcctgcaataaatgaatgtgaaat 28063633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 18026977 - 18027021
Alignment:
Q  17 tccacattccccctcaattcctgcaataaatgaatgggaaataaa 61  Q
    ||||||||||| ||| |||||||| | ||||||||||||||||||    
T  18026977 tccacattcccactccattcctgccacaaatgaatgggaaataaa 18027021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 27392719 - 27392763
Alignment:
Q  17 tccacattccccctcaattcctgcaataaatgaatgggaaataaa 61  Q
    ||||||||||| ||| |||||||| | ||||||||||||||||||    
T  27392719 tccacattcccgctcgattcctgccacaaatgaatgggaaataaa 27392763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 17073 - 17021
Alignment:
Q  37 ctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagt 89  Q
    ||||||||||||||||||||||||||||||| |||  ||||||||||| ||||    
T  17073 ctgcaataaatgaatgggaaataaacacatgtataaaataagaataacaaagt 17021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 12217255 - 12217309
Alignment:
Q  198 aacttgttccacaaactatccaggtagttagttttaactaactgtaataggtttta 253  Q
    ||||||||||||||  |||| || ||||||||| ||||||||||||||||||||||    
T  12217255 aacttgttccacaagttatctag-tagttagttgtaactaactgtaataggtttta 12217309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University