View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_high_24 (Length: 386)
Name: NF1150_high_24
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 2272788 - 2272436
Alignment:
| Q |
14 |
cacagaaccaattgaaaagctagacaattcaaattaataaactgatatgaacatcaacatatattcactttgtcttggacacgaacattaagtctgtcct |
113 |
Q |
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| T |
2272788 |
cacagaaccaattgaaaagctagacaattcaaattaataaactgatatgaacatcaacatatattcactttgtcttggacacgaacattaagtctgtcct |
2272689 |
T |
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| Q |
114 |
taaacattattcattcttctgctatttatgaaaaagaatggtaaaattagacaccgagccaaatctcgtaaattattctacattcctagagcgaggataa |
213 |
Q |
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| T |
2272688 |
taagcattattcattcttctgctatttatgaaaaagaatggtaaaattagacaccgagccaaatctcgtaaattattctacattcctagagcgaggataa |
2272589 |
T |
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| Q |
214 |
agatgaatcaatttccaccgtcaattcaataattataaactagtcagatgaattaaacagatagattcctcttggatttgtgtgaatccttgagcaaaac |
313 |
Q |
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| T |
2272588 |
agatgaatcaatttccaccgtcaattcaataattataaactagtcagatgaattaaacagatagattcctcttggatttgtgtgaatccttgagcaaaac |
2272489 |
T |
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| Q |
314 |
tttctgatggatcatgaatcatgatctgtaaaatagccaaaccagagaagtct |
366 |
Q |
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| T |
2272488 |
tttctgatggatcatgaatcatgatctgtaaaatagccaaaccagagaagtct |
2272436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 40772478 - 40772552
Alignment:
| Q |
196 |
ttcctagagcgaggataaagatgaatcaatttccaccgtcaattcaataattataaactagtcagatgaattaaa |
270 |
Q |
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|||||| |||||| ||||||| ||||||||||||| ||||||||||||| | ||||||||||||||| |||||| |
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| T |
40772478 |
ttcctaaagcgagaataaagaggaatcaatttccattgtcaattcaataactgtaaactagtcagatggattaaa |
40772552 |
T |
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