View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1150_high_32 (Length: 325)

Name: NF1150_high_32
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1150_high_32
NF1150_high_32
[»] chr1 (8 HSPs)
chr1 (30-180)||(4641404-4641554)
chr1 (205-325)||(4641667-4641787)
chr1 (273-325)||(4640551-4640603)
chr1 (243-321)||(31389087-31389165)
chr1 (243-321)||(31788219-31788297)
chr1 (243-321)||(14924701-14924779)
chr1 (255-321)||(29334241-29334307)
chr1 (277-325)||(27418186-27418234)
[»] chr6 (2 HSPs)
chr6 (257-324)||(34034192-34034259)
chr6 (261-324)||(34035005-34035068)
[»] chr4 (4 HSPs)
chr4 (261-324)||(22499122-22499185)
chr4 (257-324)||(22499931-22499998)
chr4 (245-325)||(53664235-53664315)
chr4 (286-321)||(34154821-34154856)
[»] chr8 (4 HSPs)
chr8 (245-325)||(33802318-33802398)
chr8 (243-325)||(33801522-33801604)
chr8 (243-321)||(43972029-43972107)
chr8 (277-321)||(40450963-40451007)
[»] chr2 (4 HSPs)
chr2 (243-324)||(38780007-38780088)
chr2 (243-321)||(4976448-4976526)
chr2 (243-321)||(4994355-4994433)
chr2 (277-321)||(36390984-36391028)
[»] scaffold0189 (1 HSPs)
scaffold0189 (243-321)||(12802-12880)
[»] chr3 (2 HSPs)
chr3 (277-321)||(45501271-45501315)
chr3 (281-325)||(51421656-51421700)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 30 - 180
Target Start/End: Original strand, 4641404 - 4641554
Alignment:
Q  30 cttgtgttatttttaatatttgatttctatgaatttgtgattaattaaatgaaagctgaaagttgttgcttggtaagtattagaggttgtggatcggcat 129  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  4641404 cttgtgttatttttaatatttgatttctatggatttgtgattaattaaatgaaatctgaaagttgttgcttggtaagtatcagaggttgtggatcggcat 4641503  T
Q  130 agacatgtttaaactagaaggaaacttcttggtttgttggggagggagaca 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4641504 agacatgtttaaactagaaggaaacttcttggtttgttggggagggagaca 4641554  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 325
Target Start/End: Original strand, 4641667 - 4641787
Alignment:
Q  205 gcagcagttgtatgtgggtgagtgtgagnnnnnnnttaggtgttgaatgtatatgataaaactatgttatctatttgattcaatggttgaaaattacttt 304  Q
    ||||||||||||||||||||||||||||       ||||| ||||||| | ||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  4641667 gcagcagttgtatgtgggtgagtgtgagaagaaaattaggagttgaatttctatgataaaactatgttctctatttgatccaatggttgaaaattacttt 4641766  T
Q  305 cccatggtgggaaacaattcc 325  Q
    ||| |||||||||||||||||    
T  4641767 cccttggtgggaaacaattcc 4641787  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 4640603 - 4640551
Alignment:
Q  273 atctatttgattcaatggttgaaaattactttcccatggtgggaaacaattcc 325  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  4640603 atctatttgatctaatggttgaaaattactttcccatggtgggaaacaattcc 4640551  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 321
Target Start/End: Complemental strand, 31389165 - 31389087
Alignment:
Q  243 ggtgttgaatgtatatgataaaactatgttatctatttgattcaatggttgaaaattactttcccatggtgggaaacaa 321  Q
    ||||||||||||  || ||||||||||||| ||||||| || |||| ||| ||||| ||||||||||| ||||||||||    
T  31389165 ggtgttgaatgtccataataaaactatgttctctatttaatccaatcgttaaaaatgactttcccatgatgggaaacaa 31389087  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 31788219 - 31788297
Alignment:
Q  243 ggtgttgaatgtatatgataaaactatgttatctatttgattcaatggttgaaaattactttcccatggtgggaaacaa 321  Q
    |||||||| ||| |||| ||||| |||||| ||||||| ||  ||||||| ||| | ||||||||||||||||||||||    
T  31788219 ggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaaacaa 31788297  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 321
Target Start/End: Complemental strand, 14924779 - 14924701
Alignment:
Q  243 ggtgttgaatgtatatgataaaactatgttatctatttgattcaatggttgaaaatta-ctttcccatggtgggaaacaa 321  Q
    |||||||| ||| |||||||||| |||||| ||||||| ||| || |||  ||||||| |||||||||||||||||||||    
T  14924779 ggtgttgagtgtctatgataaaaatatgttctctatttaatttaacggtc-aaaattagctttcccatggtgggaaacaa 14924701  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 29334307 - 29334241
Alignment:
Q  255 atatgataaaactatgttatctatttgattcaatggttgaaaattactttcccatggtgggaaacaa 321  Q
    ||||||||||| |||| | | ||||||||  ||||| | ||| ||||||||||||||||||||||||    
T  29334307 atatgataaaagtatggtctttatttgatctaatgggtaaaatttactttcccatggtgggaaacaa 29334241  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 27418234 - 27418186
Alignment:
Q  277 atttgattcaatggttgaaaattactttcccatggtgggaaacaattcc 325  Q
    |||||||  ||||||| |||||||||||  |||||||||||||||||||    
T  27418234 atttgatctaatggttaaaaattactttttcatggtgggaaacaattcc 27418186  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 34034259 - 34034192
Alignment:
Q  257 atgataaaactatgttatctatttgattcaatggttgaaaattactttcccatggtgggaaacaattc 324  Q
    |||||||||||||||| |||||||||| |||||||| ||||| |||||||||||||||||| ||||||    
T  34034259 atgataaaactatgttctctatttgatccaatggtttaaaataactttcccatggtgggaagcaattc 34034192  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 34035005 - 34035068
Alignment:
Q  261 taaaactatgttatctatttgattcaatggttgaaaattactttcccatggtgggaaacaattc 324  Q
    |||||||||||| |||||||||| |||||||| ||||| ||||||||||| |||||||||||||    
T  34035005 taaaactatgttctctatttgatccaatggtttaaaataactttcccatgatgggaaacaattc 34035068  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 22499185 - 22499122
Alignment:
Q  261 taaaactatgttatctatttgattcaatggttgaaaattactttcccatggtgggaaacaattc 324  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||| |||||||||    
T  22499185 taaaactatgttatctatttgatccaatggtttaaaataactttcccatgatggaaaacaattc 22499122  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 22499931 - 22499998
Alignment:
Q  257 atgataaaactatgttatctatttgattcaatggttgaaaattactttcccatggtgggaaacaattc 324  Q
    |||||||||||||||| |||||||||| |||||||| ||||| ||||||| ||||||| |||||||||    
T  22499931 atgataaaactatgttctctatttgatccaatggtttaaaataactttcctatggtggaaaacaattc 22499998  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 325
Target Start/End: Complemental strand, 53664315 - 53664235
Alignment:
Q  245 tgttgaatgtatatgataaaactatgttatctatttgattcaatggttgaaaattactttcccatggtgggaaacaattcc 325  Q
    |||||| ||| ||||||||||| ||||| ||||||| ||  ||||||  | | ||||||||||||||||||||| ||||||    
T  53664315 tgttgagtgtctatgataaaaccatgttctctattttatctaatggtcaatatttactttcccatggtgggaaagaattcc 53664235  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 286 - 321
Target Start/End: Complemental strand, 34154856 - 34154821
Alignment:
Q  286 aatggttgaaaattactttcccatggtgggaaacaa 321  Q
    |||||||||||| |||||||||||||||||||||||    
T  34154856 aatggttgaaaaatactttcccatggtgggaaacaa 34154821  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 33802318 - 33802398
Alignment:
Q  245 tgttgaatgtatatgataaaactatgttatctatttgattcaatggttgaaaattactttcccatggtgggaaacaattcc 325  Q
    |||||| ||| ||||||||||| ||||| ||||||| ||| ||||||  | | ||||||||||||||||||||| ||||||    
T  33802318 tgttgagtgtctatgataaaaccatgttctctattttatttaatggtcaatatttactttcccatggtgggaaagaattcc 33802398  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 325
Target Start/End: Complemental strand, 33801604 - 33801522
Alignment:
Q  243 ggtgttgaatgtatatgataaaactatgttatctatttgattcaatggttgaaaattactttcccatggtgggaaacaattcc 325  Q
    |||||||| ||| ||||||||||| ||||| |||| || ||| ||||||  | | ||||||| ||||||||||||| ||||||    
T  33801604 ggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaatatttacttttccatggtgggaaagaattcc 33801522  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 43972029 - 43972107
Alignment:
Q  243 ggtgttgaatgtatatgataaaactatgttatctatttgattcaatggttgaaaattactttcccatggtgggaaacaa 321  Q
    |||||||| ||| |||| ||||| |||||| ||||||| ||  ||||||| ||| | |||||||||| |||||||||||    
T  43972029 ggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaa 43972107  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 40450963 - 40451007
Alignment:
Q  277 atttgattcaatggttgaaaattactttcccatggtgggaaacaa 321  Q
    |||||||  ||||||| ||| ||||||||||||||||||||||||    
T  40450963 atttgatctaatggttaaaatttactttcccatggtgggaaacaa 40451007  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 38780007 - 38780088
Alignment:
Q  243 ggtgttgaatgtatatgataaaactatgttatctatttgattcaatggttgaaaattactttcccatggtgggaaacaattc 324  Q
    |||| |||||||  |||||||||||||||| |||||||||| ||||  || ||||| ||||||||||| ||| || ||||||    
T  38780007 ggtgctgaatgtccatgataaaactatgttctctatttgatccaataatttaaaataactttcccatgatggaaagcaattc 38780088  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 4976448 - 4976526
Alignment:
Q  243 ggtgttgaatgtatatgataaaactatgttatctatttgattcaatggttgaaaattactttcccatggtgggaaacaa 321  Q
    |||||||| ||| |||| ||||| |||||| ||||||| ||  ||||||| ||| | |||||||||| |||||||||||    
T  4976448 ggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaa 4976526  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 4994355 - 4994433
Alignment:
Q  243 ggtgttgaatgtatatgataaaactatgttatctatttgattcaatggttgaaaattactttcccatggtgggaaacaa 321  Q
    |||||||| ||| |||| ||||| |||||| ||||||| ||  ||||||| ||| | |||||||||| |||||||||||    
T  4994355 ggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaa 4994433  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 36391028 - 36390984
Alignment:
Q  277 atttgattcaatggttgaaaattactttcccatggtgggaaacaa 321  Q
    |||||||  ||||||| ||| ||||||||||||||||||||||||    
T  36391028 atttgatctaatggttaaaatttactttcccatggtgggaaacaa 36390984  T

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Target: scaffold0189 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 12802 - 12880
Alignment:
Q  243 ggtgttgaatgtatatgataaaactatgttatctatttgattcaatggttgaaaattactttcccatggtgggaaacaa 321  Q
    |||||||| ||| |||||||||| |||||| |||| || ||  ||||||  ||| | ||||||||||||||||||||||    
T  12802 ggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattaactttcccatggtgggaaacaa 12880  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 45501271 - 45501315
Alignment:
Q  277 atttgattcaatggttgaaaattactttcccatggtgggaaacaa 321  Q
    ||||||| |||||||| ||| ||||||||||||||||| ||||||    
T  45501271 atttgatccaatggtttaaatttactttcccatggtggaaaacaa 45501315  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 51421656 - 51421700
Alignment:
Q  281 gattcaatggttgaaaattactttcccatggtgggaaacaattcc 325  Q
    |||| ||||||| ||| | ||||||||||||||||||||||||||    
T  51421656 gatttaatggttcaaattgactttcccatggtgggaaacaattcc 51421700  T

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