View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_high_34 (Length: 318)
Name: NF1150_high_34
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 69 - 307
Target Start/End: Original strand, 41277738 - 41277976
Alignment:
| Q |
69 |
tctactacaacataacccacaaacaccaaaagcccaaaatacaactgcaaaccagcaagcaagacctcagtaaggtattttattcataggcatataggat |
168 |
Q |
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| T |
41277738 |
tctactacaacataacccacaaacaccaaaagcccaaaatacaactgcaaaccagcaagcaagacctcagtaaggtattttattcatagacatataggat |
41277837 |
T |
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| Q |
169 |
aaaataggtaccataatacattttcactaagtttgtagcataaattagcaagaatgataaataatcacttacctcaaacttaaagagcacagtagaacca |
268 |
Q |
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| T |
41277838 |
aaaataggtaccataatacattttcactaagtttgtagcataaattagcaagaatgataaataatcacttacctcaaacttaaagagcgcagtagaacca |
41277937 |
T |
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| Q |
269 |
ccaaagacagaggaagcaaaatgcaaccacataagaata |
307 |
Q |
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| T |
41277938 |
ccaaagacagaggaagcaaaatgcaaccacataagaata |
41277976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 4214288 - 4214238
Alignment:
| Q |
69 |
tctactacaacataacccacaaacaccaaaagcccaaaatacaactgcaaa |
119 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4214288 |
tctactacaatgtaacccacaaacaccaaaagcccaaaatacaactgcaaa |
4214238 |
T |
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