View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1150_high_35 (Length: 315)

Name: NF1150_high_35
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1150_high_35
NF1150_high_35
[»] scaffold0032 (1 HSPs)
scaffold0032 (37-315)||(31931-32206)


Alignment Details
Target: scaffold0032 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 37 - 315
Target Start/End: Complemental strand, 32206 - 31931
Alignment:
Q  37 cttaatttatcaaacttctttaatgtgttttagaaatttaagatgtagttaatctttgtaatcgtgaagtagtagagtaagaatcaagattagaaacata 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  32206 cttaatttatcaaacttctttaatgtgttttagaaatttaagatgtagttaatctttgtaatcgtgaagtag---agtaagaatcaagattagaaacata 32110  T
Q  137 aaggagggcaaggatttagtttgctacaatatagatccaagttgagataattgatatcataattgatcgtgttttgtagaatggttagattgcttttatt 236  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32109 aaggagggcaaggatttagtttgctacagtatagatccaagttgagataattgatatcataattgatcgtgttttgtagaatggttagattgcttttgtt 32010  T
Q  237 ttgtgatactgttcattttgagagtggacttggatttggaaggtgcttgggttgcaagtctctaaatacttaataagaa 315  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  32009 ttgtgatactgttcattttgtgagtggacttggattcggaaggtgcttgggttgcaagtctctatatacttaataagaa 31931  T

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