View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1150_high_36 (Length: 308)
Name: NF1150_high_36
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_high_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 134 - 279
Target Start/End: Complemental strand, 2917196 - 2917051
Alignment:
| Q |
134 |
caataaaaagtgcaattgcatgcaattcacaactccagaactgattccaaatgatcaggtttaacctgatataatttaaaaagccaccttataatttgac |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2917196 |
caataaaaagtgcaattgcatgcaattcacaactccagaactgattccaaatgatcaggtttaacctgatataatttaaaaagccaccttataatttgac |
2917097 |
T |
|
| Q |
234 |
catctaatcttaattgaattatcatcgatgtcctagatgtatgaat |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2917096 |
catctaatcttaattgaattatcatcgatgtcctagatgtatgaat |
2917051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University