View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1150_high_37 (Length: 301)

Name: NF1150_high_37
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1150_high_37
NF1150_high_37
[»] chr4 (1 HSPs)
chr4 (62-135)||(28719574-28719647)
[»] chr1 (2 HSPs)
chr1 (62-135)||(23204849-23204922)
chr1 (136-189)||(23203493-23203547)
[»] chr5 (5 HSPs)
chr5 (62-135)||(32250396-32250470)
chr5 (73-135)||(32255881-32255943)
chr5 (62-135)||(32264927-32265000)
chr5 (137-172)||(32264762-32264797)
chr5 (136-172)||(32255711-32255747)


Alignment Details
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 28719647 - 28719574
Alignment:
Q  62 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtttgtctctgagagcccaattaatcatatt 135  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  28719647 cttgcaccatggaagacagtttcaacgatatcaatgaactcttgtttgtctctgagagcccaattaatcttatt 28719574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 23204922 - 23204849
Alignment:
Q  62 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtttgtctctgagagcccaattaatcatatt 135  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  23204922 cttgcaccacagaagacagtttcaaccatatcaatgaactcttgttcgtctctgagagtccaattaatcatatt 23204849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 23203547 - 23203493
Alignment:
Q  136 tagttacttgcaattatttgcatctt-ataattttatcaagtatgtgtagctggt 189  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23203547 tagttacttgcaattatttgcatctttataattttatcaagtatgtgtagctggt 23203493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 32250470 - 32250396
Alignment:
Q  62 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtttgtctc-tgagagcccaattaatcatatt 135  Q
    |||| |||||||||||||||||||||  |||||| ||||||||||||||||| | ||||||||||||||||||||    
T  32250470 cttgaaccacggaagacagtttcaacggtatcaacgaactcttgtttgtctcttcagagcccaattaatcatatt 32250396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 32255943 - 32255881
Alignment:
Q  73 gaagacagtttcaaccatatcaatgaactcttgtttgtctctgagagcccaattaatcatatt 135  Q
    |||||||||||||||  |||||| |||||||||||||||||||||| ||||||||||| ||||    
T  32255943 gaagacagtttcaacggtatcaacgaactcttgtttgtctctgagaacccaattaatcttatt 32255881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 32265000 - 32264927
Alignment:
Q  62 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtttgtctctgagagcccaattaatcatatt 135  Q
    |||||||| | |||||||||||||||  |||||| |||||||||||||||||||| | ||||||||||| ||||    
T  32265000 cttgcaccgcagaagacagtttcaacggtatcaacgaactcttgtttgtctctgataacccaattaatcttatt 32264927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 32264797 - 32264762
Alignment:
Q  137 agttacttgcaattatttgcatcttataattttatc 172  Q
    ||||||||||||||||||||||||||||||||||||    
T  32264797 agttacttgcaattatttgcatcttataattttatc 32264762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 32255747 - 32255711
Alignment:
Q  136 tagttacttgcaattatttgcatcttataattttatc 172  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  32255747 tagttacttgcaattacttgcatcatataattttatc 32255711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University