View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_high_40 (Length: 296)
Name: NF1150_high_40
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 30 - 287
Target Start/End: Complemental strand, 32812370 - 32812120
Alignment:
| Q |
30 |
atattttttcaataaaaatataattacatctcaccttaatcaaaagaatatgttaatggctttgttgagaggttttgagataatgtcgggtttaaaagtg |
129 |
Q |
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| T |
32812370 |
atattttttcaataaaaatataattacatctcaccttaatcaaaagaatatgttaatggctttgtcgagaggttttgagataatgtcgggtttgaaagtg |
32812271 |
T |
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| Q |
130 |
annnnnnncaaaagttgtttagtgtggagtgaatgtttcacaagagtttatgttaatgacgtataattttttaaattgtagtgaaggaggtcttttgttc |
229 |
Q |
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| T |
32812270 |
atttttttcaaaagttgtttagtggggggtgaatgtttcacaagagttt------atgacgtataattttttaaattgtagtgaaggaggtcttttgttc |
32812177 |
T |
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| Q |
230 |
aaatatttgaggctatctatgggggaaaatctgaggaatttatctacttgagaattat |
287 |
Q |
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| T |
32812176 |
aaatatttgaggccatcgatggggg-aaatctgaggaatttatctaattgagaattat |
32812120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 41711368 - 41711300
Alignment:
| Q |
172 |
agagtttatgttaatgacgtataattttttaaattgtagtgaaggaggtcttttgttcaaatatttgag |
240 |
Q |
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| T |
41711368 |
agagtttatgaagatgacttgtaattttttaaattgtagtgaaggttttgttttgttcaagtatttgag |
41711300 |
T |
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