View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_high_5 (Length: 663)
Name: NF1150_high_5
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_high_5 |
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| [»] scaffold0010 (2 HSPs) |
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Alignment Details
Target: scaffold0010 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 29 - 408
Target Start/End: Complemental strand, 252666 - 252285
Alignment:
| Q |
29 |
acctccaagagccatatgaacacaatcaatttcttctttattttcttgtatttctgctaatggtgaattttaaagtatagctcgacatttcataattatg |
128 |
Q |
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| T |
252666 |
acctccaagagccatatgaacacaatcaatttcttctttattttcttgtatttctgctaatggtgaattttaa-gtatagctcaacatttcataattatg |
252568 |
T |
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| Q |
129 |
tcaaaatcatagattaatttagtaagatttacttccacatacgtggctttgcccgtagtgaacaattacctaatgtattttctctataatattacctcaa |
228 |
Q |
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| T |
252567 |
tcaaaatcatagattaatttagtaagatttacttccagatacgtggctttgcccgtaatgaacaattacctaatgtattttctctataatattacctcaa |
252468 |
T |
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| Q |
229 |
atgatgtaaacgagatcgaatacttacgttctgaagcttgttcttaaattgaaaaatgattcaagctattagaatttaagtataccttcaatgtctttaa |
328 |
Q |
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| T |
252467 |
atgatgtaaacgagatcggatacttacgttctgaagcttgttcttaaattgaaaaatgattcaagctattagaatttaagtataccttcaatgtctttaa |
252368 |
T |
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| Q |
329 |
attttctttaaacatttagcaatttatgtttccagttaaaaacttttgtcttttcacactt---tacttttgaaaggaacctg |
408 |
Q |
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| T |
252367 |
attttctttaaacatttagcaatttatgtttccagttaaaaacttttgtcttttcacactttactacttttgaaaggaacctg |
252285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 420 - 652
Target Start/End: Complemental strand, 252217 - 251971
Alignment:
| Q |
420 |
aaagaaaaatcgagaagagacttctaaccacgattcactgtcgtaaagtctagaagtcattgatacgggcgcataccagttccattcagaatcacatttt |
519 |
Q |
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| T |
252217 |
aaagaaaaatcgagaagagacttctaaccacgattcactgtcgtaaagtctagaagtcgttgatacgggcgcataccagttccattcagaatcacatttt |
252118 |
T |
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| Q |
520 |
tcctcatagctctcactattctccaacacgacctttgtcttcacgatggcagttgtctcactttttcgtcttctgttatctggcaggtattcg------- |
612 |
Q |
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| T |
252117 |
tcctcatagctctcactattctccaacacgacctttgtcttcacgatggcagttgtctcactttttcgtcttctgttatctggcaggtattcgttttggt |
252018 |
T |
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| Q |
613 |
-------ttttagccggctttggtgcagtttggactttttgttctgt |
652 |
Q |
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| T |
252017 |
tgcttggttttagccggctttggtgcagtttggactttttgttctgt |
251971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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