View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1150_high_50 (Length: 219)
Name: NF1150_high_50
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_high_50 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 3800786 - 3800983
Alignment:
| Q |
1 |
gtggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatttgtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3800786 |
gtggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttctcaataaatcgtatatttgtga |
3800885 |
T |
|
| Q |
101 |
tgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtggatcaagtagttggtgatgatg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3800886 |
tgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtgtatcaagtagttggtgatgatg |
3800983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 3789321 - 3789124
Alignment:
| Q |
1 |
gtggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatttgtga |
100 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
3789321 |
gtggatggaattccaccattgaaggtgtacatgccggtgtacctttcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtga |
3789222 |
T |
|
| Q |
101 |
tgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtggatcaagtagttggtgatgatg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789221 |
tgtgtggaagactggacttgaattagagaaagatgatgatggatttatatcaaggcaagagataaagaagaaggtggatcaagtagttggtgatgatg |
3789124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 3767985 - 3767850
Alignment:
| Q |
1 |
gtggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatttgtga |
100 |
Q |
| |
|
|||| ||||||||||| |||||||||||| || ||||| |||||||||| |||||||||||| || |||||||||| || || || ||||||||||| |
|
|
| T |
3767985 |
gtggttggaattctactatagaaggtgtatattctggtatacctttcttatgttggccatttgcaactgatcaatttacgaacaagtcatatatttgtga |
3767886 |
T |
|
| Q |
101 |
tgtgtggaagactggacttgaattagagaaagatga |
136 |
Q |
| |
|
|||||||||| |||| |||||||||| || ||||| |
|
|
| T |
3767885 |
tgtgtggaaggttggatttgaattagacaaggatga |
3767850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 3780261 - 3780122
Alignment:
| Q |
3 |
ggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatttgtgatg |
102 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||| | |||||||||| | || || || ||| ||||||||| |
|
|
| T |
3780261 |
ggatggaattctaccgtagaaggtgtatatagcggtgtacctttcttgtgttggccgtttcacggtgatcaatttatgaacaagtcatatgtttgtgatg |
3780162 |
T |
|
| Q |
103 |
tgtggaagactggacttgaattagagaaagatgatgatgg |
142 |
Q |
| |
|
|||||||| |||||||||| |||| || ||||| ||||| |
|
|
| T |
3780161 |
tgtggaaggttggacttgaactagacaaggatgaagatgg |
3780122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University