View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1150_low_10 (Length: 565)
Name: NF1150_low_10
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_10 |
 | |
|
| [»] scaffold0010 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0010 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 29 - 408
Target Start/End: Complemental strand, 252666 - 252285
Alignment:
| Q |
29 |
acctccaagagccatatgaacacaatcaatttcttctttattttcttgtatttctgctaatggtgaattttaaagtatagctcgacatttcataattatg |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
252666 |
acctccaagagccatatgaacacaatcaatttcttctttattttcttgtatttctgctaatggtgaattttaa-gtatagctcaacatttcataattatg |
252568 |
T |
|
| Q |
129 |
tcaaaatcatagattaatttagtaagatttacttccacatacgtggctttgcccgtagtgaacaattacctaatgtattttctctataatattacctcaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
252567 |
tcaaaatcatagattaatttagtaagatttacttccagatacgtggctttgcccgtaatgaacaattacctaatgtattttctctataatattacctcaa |
252468 |
T |
|
| Q |
229 |
atgatgtaaacgagatcgaatacttacgttctgaagcttgttcttaaattgaaaaatgattcaagctattagaatttaagtataccttcaatgtctttaa |
328 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
252467 |
atgatgtaaacgagatcggatacttacgttctgaagcttgttcttaaattgaaaaatgattcaagctattagaatttaagtataccttcaatgtctttaa |
252368 |
T |
|
| Q |
329 |
attttctttaaacatttagcaatttatgtttccagttaaaaacttttgtcttttcacactt---tacttttgaaaggaacctg |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
252367 |
attttctttaaacatttagcaatttatgtttccagttaaaaacttttgtcttttcacactttactacttttgaaaggaacctg |
252285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 420 - 553
Target Start/End: Complemental strand, 252217 - 252084
Alignment:
| Q |
420 |
aaagaaaaatcgagaagagacttctaaccacgattcactgtcgtaaagtctagaagtcattgatacgggcgcataccagttccattcagaatcacatttt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
252217 |
aaagaaaaatcgagaagagacttctaaccacgattcactgtcgtaaagtctagaagtcgttgatacgggcgcataccagttccattcagaatcacatttt |
252118 |
T |
|
| Q |
520 |
tcctcatagctctcactattctccaacacgacct |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
252117 |
tcctcatagctctcactattctccaacacgacct |
252084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University