View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1150_low_12 (Length: 545)
Name: NF1150_low_12
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 310
Target Start/End: Complemental strand, 30184210 - 30183909
Alignment:
| Q |
8 |
cgaagaatatcatctttttctaaatttatctattaaaatgagaaataannnnnnnnnctcgtctagatttcaccatttgaaaatatcttaggaataatct |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30184210 |
cgaaaaatatcatctttttctaaatttatctataaaaatgagaaatattttttttttctcgtctagatttcaccatttaaaaatatcttaggaataatct |
30184111 |
T |
|
| Q |
108 |
tctttcatttgtaaaacaattgtgtatttattcaaatccgaataaatgtgcacaagaattgttctctcctgaaatccaatcattcatatactatatatgt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30184110 |
tctttcatttgtaaaacaattgtgtatttattcaaatccgaataaatgtgcacaagaattgttctctcttgaaatccaatcattcatatactatatatgt |
30184011 |
T |
|
| Q |
208 |
atgcgttcaaaatgaattcatcgagagttccaatcatgtgctgaagacaatttcttttcaaaaaatggtttgcattataataatctaacacaaaacatat |
307 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30184010 |
atgcgttcaaaatgagttcatcgagagttccaatcatgtgctgaagacaatttc-tttcaaaaaatggtttacattataataatctaacacaaaacatat |
30183912 |
T |
|
| Q |
308 |
tta |
310 |
Q |
| |
|
||| |
|
|
| T |
30183911 |
tta |
30183909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 370 - 516
Target Start/End: Complemental strand, 30183849 - 30183703
Alignment:
| Q |
370 |
ctatagtgaaaaactaatccacaatacggagatagcttctactttgatcggttaagatttcattttcaaccaaaaccgagttttgaaatttgagcatata |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30183849 |
ctatagtgaaaaactaatccacaatacggagatagcttctactttgatcggttaagatttcattttcaaccaaaaccgagttttgaaatttgagcatata |
30183750 |
T |
|
| Q |
470 |
atgagagcgaattggtatgagaattggtgtttgcctgatgaacaagt |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30183749 |
atgagagcgaattggtatgagaattggtgtttgcctgatgaacaagt |
30183703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University