View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1150_low_17 (Length: 506)

Name: NF1150_low_17
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1150_low_17
NF1150_low_17
[»] chr2 (14 HSPs)
chr2 (7-348)||(410391-410732)
chr2 (46-261)||(821334-821549)
chr2 (54-292)||(1399985-1400220)
chr2 (49-292)||(1403703-1403946)
chr2 (413-477)||(410265-410329)
chr2 (49-249)||(973644-973844)
chr2 (49-249)||(965073-965279)
chr2 (417-477)||(965460-965520)
chr2 (413-477)||(821159-821223)
chr2 (150-261)||(957815-957926)
chr2 (427-477)||(974016-974066)
chr2 (425-473)||(982083-982131)
chr2 (415-476)||(824897-824955)
chr2 (226-304)||(989586-989664)
[»] chr3 (3 HSPs)
chr3 (46-311)||(45810113-45810378)
chr3 (413-475)||(45810477-45810539)
chr3 (233-305)||(8316666-8316738)
[»] chr7 (5 HSPs)
chr7 (51-261)||(12105508-12105718)
chr7 (46-254)||(28449412-28449617)
chr7 (413-475)||(12105286-12105348)
chr7 (413-477)||(1446001-1446065)
chr7 (413-477)||(1459314-1459378)
[»] chr6 (2 HSPs)
chr6 (54-256)||(10116388-10116590)
chr6 (420-477)||(10116745-10116802)
[»] chr1 (1 HSPs)
chr1 (46-191)||(48675087-48675232)
[»] chr5 (1 HSPs)
chr5 (139-256)||(36199331-36199445)


Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 410732 - 410391
Alignment:
Q  7 gaagcaaaggacagaataaagaaactaccactactttcatatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtcttt 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  410732 gaagcaaaagacagaataaagaaactaccactactttcatatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtcttt 410633  T
Q  107 ctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  410632 ctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtag 410533  T
Q  207 gcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtttaatgaaaagcaaggtgaaacaaattcggaatccacccaattttcttgatcatcttct 306  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  410532 gcctgcaaatgcgaagtcccgaatagtgcaagttgtaaggtttaacgaaaagcaaggtggaacaaattcggaatccacccaattttcttgatcatcttct 410433  T
Q  307 tcaatgaactcatcctcccaattgcagccttgtaacttctgt 348  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  410432 tcaatgaactcatcctcccaattacagccttgtaacttctgt 410391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 46 - 261
Target Start/End: Complemental strand, 821549 - 821334
Alignment:
Q  46 tatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatag 145  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||||  |||||| | ||||||| || ||| ||||| ||||||| | |||| |||||||    
T  821549 tatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcagattgtttattgttgctccagattgtcatag 821450  T
Q  146 ttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaag 245  Q
    ||  ||||||||| |||||||| ||||||||| |||||||||||||||||  |  |||| ||||||||| ||| |||||||| ||| |||||||||||||    
T  821449 tttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaag 821350  T
Q  246 gtttaatgaaaagcaa 261  Q
    ||||||||||| ||||    
T  821349 gtttaatgaaacgcaa 821334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 54 - 292
Target Start/End: Complemental strand, 1400220 - 1399985
Alignment:
Q  54 aattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaa 153  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||| ||||||| |||| | |  | || ||| |||| |||| | |||||||  ||||    
T  1400220 aattgaaagttgacatgttacagaagcccttggacatgagaataatactctttctgctttgggccatctcatgtagcaccagattggcatagtttctaaa 1400121  T
Q  154 actcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtttaatg 253  Q
    |||||||||||||  ||||||||  |||||||||||||| ||  | ||||| ||||| ||    | |||||||| ||| |||||||||||||||||||||    
T  1400120 actcttgcattctgcagaataaaccttgctaacataatgcgattacgttgttggccttca---tcaaagtcccgcatattgcaagttgtaaggtttaatg 1400024  T
Q  254 aaaagcaaggtgaaacaaattcggaatccacccaatttt 292  Q
    |||  |||  || |||| |||| | ||||||||||||||    
T  1400023 aaagacaacttggaacagattcaggatccacccaatttt 1399985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 49 - 292
Target Start/End: Complemental strand, 1403946 - 1403703
Alignment:
Q  49 caataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttc 148  Q
    |||| ||||| |||||||||||||| ||| ||| |||||||||||||||||| ||||||| |||||| |  | |||||| |||| |||| | |||||||     
T  1403946 caatcaattgtaagttgacatgttgcagatgcctttggacatgaggataatactctttctgctttaggccatctcttgtagcaccagattgacatagttt 1403847  T
Q  149 gtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtt 248  Q
     ||||||||||||||| |  ||||||||  |||||||||||||| ||  | | ||| || || |||   | |||||||| ||| ||||||||||||||||    
T  1403846 ctaaaactcttgcattatccagaataaaccttgctaacataatgcgattacggtgttggtctacaacaacaaagtcccgcatattgcaagttgtaaggtt 1403747  T
Q  249 taatgaaaagcaaggtgaaacaaattcggaatccacccaatttt 292  Q
    |||||||| ||||  || |||  |||| | ||||||||||||||    
T  1403746 taatgaaaggcaacttggaactgattcaggatccacccaatttt 1403703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 413 - 477
Target Start/End: Complemental strand, 410329 - 410265
Alignment:
Q  413 atcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggc 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  410329 atcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggc 410265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 49 - 249
Target Start/End: Original strand, 973644 - 973844
Alignment:
Q  49 caataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttc 148  Q
    |||| ||||||||| |||||||||| ||||||| |||| ||||  |||||| | |||||||  | |||  ||||  |||||| | ||||  ||||||||     
T  973644 caattaattgaaagctgacatgttgcagaagcctttgggcatggagataattgactttctatatcagatcgtttactgttgctccagattttcatagttt 973743  T
Q  149 gtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtt 248  Q
    ||||||||||||| ||||  ||||||||| |||||||||||||||||  | ||||| |||||||| |||| |||||||  ||| ||||||||||||||||    
T  973744 gtaaaactcttgcgttctccagaataaatcttgctaacataatgtgattacgttgttggcctgcatatgcaaagtcccacatagtgcaagttgtaaggtt 973843  T
Q  249 t 249  Q
    |    
T  973844 t 973844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 249
Target Start/End: Original strand, 965073 - 965279
Alignment:
Q  49 caataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttct------actttagactgtttcttgttgcacaagatagtca 142  Q
    ||||| ||||| |||||||||| || |||||||||  ||||||| ||||||| |||||||      |||||||||  |||| ||| |||| | || | ||    
T  965073 caatacattgagagttgacatgctgaagaagccctatgacatgatgataatactctttctaattctactttagaccctttcgtgtagcaccacattgaca 965172  T
Q  143 tagttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgt 242  Q
    |||||  |||||||||||||||||  ||||||||| |||||| ||||||||||  | ||||| |||||||| |||| |||||||  ||| ||||||||||    
T  965173 tagtttctaaaactcttgcattctccagaataaatcttgctagcataatgtgattacgttgttggcctgcatatgcaaagtcccacatagtgcaagttgt 965272  T
Q  243 aaggttt 249  Q
    |||||||    
T  965273 aaggttt 965279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 417 - 477
Target Start/End: Original strand, 965460 - 965520
Alignment:
Q  417 aatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggc 477  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  965460 aatatgattgttaaatttaacaaacaaacctgataaagttcaagattttgaagcttagggc 965520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 413 - 477
Target Start/End: Complemental strand, 821223 - 821159
Alignment:
Q  413 atcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggc 477  Q
    |||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  821223 atcaaataggattcttaaacttaacaagcaaacctgataaagttcaagattttgaagcttagggc 821159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 957815 - 957926
Alignment:
Q  150 taaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggttt 249  Q
    ||||||||| |||||||| |||||||||  |||||| ||||  |||  |  |||| ||||||||| ||| |||||||| ||| |||||||||||||||||    
T  957815 taaaactctcgcattcttcagaataaataatgctaaaataagatgattactttgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaaggttt 957914  T
Q  250 aatgaaaagcaa 261  Q
    ||||||| ||||    
T  957915 aatgaaaggcaa 957926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 427 - 477
Target Start/End: Original strand, 974016 - 974066
Alignment:
Q  427 ttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggc 477  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  974016 ttaaatttaacaaacaaacctgataaaggtcaagattttgaagcttagggc 974066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 473
Target Start/End: Original strand, 982083 - 982131
Alignment:
Q  425 tcttaaatttaacaaacaaacccgataaagttcaagattttgaagctta 473  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  982083 tcttatatttaacaaacaaacctgataaaggtcaagattttgaagctta 982131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 415 - 476
Target Start/End: Complemental strand, 824955 - 824897
Alignment:
Q  415 caaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttaggg 476  Q
    |||||| |||||||||| ||||   |||||||||||||||||||||||| ||||||||||||    
T  824955 caaatacgattcttaaacttaa---acaaacccgataaagttcaagattctgaagcttaggg 824897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 304
Target Start/End: Original strand, 989586 - 989664
Alignment:
Q  226 cgaataatgcaagttgtaaggtttaatgaaaagcaaggtgaaacaaattcggaatccacccaattttcttgatcatctt 304  Q
    |||||| |||||||| |||||| | |||||| |||  ||| ||||||||| |  |||||||||||||||||||||||||    
T  989586 cgaatagtgcaagttctaaggtatgatgaaaggcattgtggaacaaattctggttccacccaattttcttgatcatctt 989664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 46 - 311
Target Start/End: Original strand, 45810113 - 45810378
Alignment:
Q  46 tatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatag 145  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |||||| ||||||| ||||  || ||||| | || |||||||    
T  45810113 tatcaataaattgaaagttgacattttgcagaagcccttggacatgaagataatagtttttctattttagaccgttttctgctgcaccaaattgtcatag 45810212  T
Q  146 ttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaag 245  Q
    ||  ||||||| |||||||||| ||||||||  ||||||||||||  |||  | |||||| |||||||||||| |||||||| ||| ||||||| || ||    
T  45810213 tttctaaaacttttgcattcttcagaataaaccttgctaacataacatgattacgttgtaagcctgcaaatgcaaagtcccgcatagtgcaagtcgtgag 45810312  T
Q  246 gtttaatgaaaagcaaggtgaaacaaattcggaatccacccaattttcttgatcatcttcttcaat 311  Q
    ||||||||||| ||||| || |||| |||  | ||   |||| |||||||||||||| ||| ||||    
T  45810313 gtttaatgaaaggcaagttggaacagattttggataggcccagttttcttgatcatcatctgcaat 45810378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 475
Target Start/End: Original strand, 45810477 - 45810539
Alignment:
Q  413 atcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagg 475  Q
    ||||||||||||  ||||||||||||| |||||| ||||||| || ||| |||||||||||||    
T  45810477 atcaaatatgatcgttaaatttaacaagcaaacctgataaaggtcgagactttgaagcttagg 45810539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 8316738 - 8316666
Alignment:
Q  233 tgcaagttgtaaggtttaatgaaaagcaaggtgaaacaaattcggaatccacccaattttcttgatcatcttc 305  Q
    |||||||| |||||| | || ||| |||  ||| ||||||||| |  ||||||||||||||||||||||||||    
T  8316738 tgcaagttctaaggtgtgataaaaggcattgtggaacaaattctggttccacccaattttcttgatcatcttc 8316666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 261
Target Start/End: Complemental strand, 12105718 - 12105508
Alignment:
Q  51 ataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgt 150  Q
    ||||||||||||||||||||||| |||||| |||| ||| |||| |||| ||||||||| || ||||||||||  |  |||| |||| | |||| ||  |    
T  12105718 ataaattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagactgtttcccgaagcaccagattgacatattttct 12105619  T
Q  151 aaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggttta 250  Q
    |||||| ||| |||||| ||||||||||||||||||||||||||| ||   ||||||||| ||| ||| ||||| || ||  | |||||| ||||||||     
T  12105618 aaaactgttgaattcttcagaataaattttgctaacataatgtgataactctgtaggcctccaattgcaaagtcacggatcgtacaagttctaaggtttg 12105519  T
Q  251 atgaaaagcaa 261  Q
    |||||| ||||    
T  12105518 atgaaaggcaa 12105508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 46 - 254
Target Start/End: Original strand, 28449412 - 28449617
Alignment:
Q  46 tatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatag 145  Q
    |||||||||| |||||||||||| ||||| || |||||||||||||||||||||   ||||||| || ||  ||||  || |  | | | ||  |||| |    
T  28449412 tatcaataaactgaaagttgacaagttgtggatgcccttggacatgaggataattccctttctatttgaggttgttctttatcactccatatcatcatgg 28449511  T
Q  146 ttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaag 245  Q
    || |||||||||||||||| || |||||| || |||||| |||||||| |   | ||||||| || ||||||| |||||||||||| |||||||||||||    
T  28449512 tttgtaaaactcttgcattattaagaatatatcttgctagcataatgtca---ttttgtaggtctacaaatgcaaagtcccgaatagtgcaagttgtaag 28449608  T
Q  246 gtttaatga 254  Q
     | ||||||    
T  28449609 atgtaatga 28449617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 413 - 475
Target Start/End: Complemental strand, 12105348 - 12105286
Alignment:
Q  413 atcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagg 475  Q
    ||||||||||||| |||||||||| ||||||||| || |||| ||||||||||||||||||||    
T  12105348 atcaaatatgattgttaaatttaagaaacaaacctgaaaaaggtcaagattttgaagcttagg 12105286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 477
Target Start/End: Original strand, 1446001 - 1446065
Alignment:
Q  413 atcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggc 477  Q
    |||||||| |||| ||||| |||| ||||||||| |||||| ||||| |||||||||||||||||    
T  1446001 atcaaatacgattgttaaaattaagaaacaaacctgataaaattcaatattttgaagcttagggc 1446065  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 477
Target Start/End: Original strand, 1459314 - 1459378
Alignment:
Q  413 atcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggc 477  Q
    ||||||||| ||| ||||| |||| ||||||||| |||||||||||||| |||||||||| ||||    
T  1459314 atcaaatataattgttaaaattaagaaacaaacctgataaagttcaagagtttgaagcttggggc 1459378  T

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Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 54 - 256
Target Start/End: Original strand, 10116388 - 10116590
Alignment:
Q  54 aattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaa 153  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| | |||||||| ||||||| |||||  |   ||| |||| | |||||||  ||||    
T  10116388 aattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagaccgtttcccgcaacaccagattgacatagtttctaaa 10116487  T
Q  154 actcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtttaatg 253  Q
    ||||| |||||||  ||||||||  | |||| |||||||||| ||   |||||||||| |||| | || ||||| ||| | ||||||||||||||| |||    
T  10116488 actctcgcattctcaagaataaacctagctagcataatgtgataacactgtaggcctgaaaattcaaattcccgcatagtacaagttgtaaggtttgatg 10116587  T
Q  254 aaa 256  Q
    |||    
T  10116588 aaa 10116590  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 420 - 477
Target Start/End: Original strand, 10116745 - 10116802
Alignment:
Q  420 atgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggc 477  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  10116745 atgattgttaaatttaacaaacaaacctgataaagttcaagattttgaaggttagggc 10116802  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 46 - 191
Target Start/End: Original strand, 48675087 - 48675232
Alignment:
Q  46 tatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatag 145  Q
    |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||   ||||||| || ||  || | ||||| || | | || |||||||    
T  48675087 tatcaataaactgaaagttgacatgttgcagaggcccttggacatgaggataattccctttctatttgaggttggtccttgtcgctccatattgtcatag 48675186  T
Q  146 ttcgtaaaactcttgcattctttagaataaattttgctaacataat 191  Q
    || |||||||| ||||||| ||||||||| || |||||||||||||    
T  48675187 tttgtaaaacttttgcattatttagaatatatcttgctaacataat 48675232  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 36199445 - 36199331
Alignment:
Q  139 gtcatagttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaag 238  Q
    ||||||||| |||||||||||||||| ||||||||| || |||||||||||| ||     ||||||||| || |||| ||||||||||||||| ||||||    
T  36199445 gtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggt---cgtgttgtaggtctacaaaagcgaagtcccgaatagtgcaag 36199349  T
Q  239 ttgtaaggtttaatgaaa 256  Q
    || |||| | ||||||||    
T  36199348 ttctaagatataatgaaa 36199331  T

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