View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_18 (Length: 482)
Name: NF1150_low_18
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_18 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 52 - 482
Target Start/End: Complemental strand, 44743232 - 44742805
Alignment:
| Q |
52 |
aaaaatgtgggaagattatatgtttttcatacatacaagaaagagaagtatttcgaaatattggagggagcgtgagaagagggtgtggaaaacaaattac |
151 |
Q |
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| T |
44743232 |
aaaaatgtgggaagattatatgtttttcatacatacaagaaagagaagtatttcgaaatattggagggagcgtgagaagagggtgtggaaaacaaattcg |
44743133 |
T |
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| Q |
152 |
acatagaaaaacttgtttgggccaaaatggcccaattatctcaactaaatatccaacctctaagaaacgtgtgtatcaacaacagcttagttatgtatga |
251 |
Q |
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| T |
44743132 |
acatagaaaaacttgtttgggccaaaatggcccaattatctcaagtaaatatccaacctctaagaaacgtgtgtatcaacaacagcttagttatgtatga |
44743033 |
T |
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| Q |
252 |
attagtccccccagctctctctcgctctgaaccctaaaattaaacacttcttcatcatccaaaccacctagtttcattctcactccgatcccgccacttc |
351 |
Q |
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| T |
44743032 |
attagtccccccagctc--tctcgctctgaaccctaaaattaaacacttcttcatcatccaaaccacctagtttcattctcactccgatcccgccacttc |
44742935 |
T |
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| Q |
352 |
acggccacaaattcagcactttctcacttttccagctcttcaaggaggtttgtcgatccaactttttaatactttttgatgttttagtaaaagcaaacag |
451 |
Q |
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| T |
44742934 |
acggccgcaaattcagcactttctcacttttccagctcttcaaggaggtttgtcgatccaac-ttttaatactttttgatgttttagtaaaagcaaagag |
44742836 |
T |
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| Q |
452 |
tataaaattaatttgcaggtatctataacat |
482 |
Q |
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| T |
44742835 |
tataaaattaatttgcaggtatctataacat |
44742805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 125 - 436
Target Start/End: Complemental strand, 53238988 - 53238684
Alignment:
| Q |
125 |
gagaagagggtgtggaaaacaaattacacatagaaaaacttgtttgggccaaaatggcccaattatctcaactaaatatccaacctctaagaaacgtgtg |
224 |
Q |
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| T |
53238988 |
gagaggagggtg-ggaaaacaaatgccacataaaaaaacttgtttgggccaaaatggtccaattctctcaactaaatatccaacctttaagaaacgtgtt |
53238890 |
T |
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| Q |
225 |
tatcaacaacagcttagttatgtatgaattagtccccccagctctctctcgctctgaaccctaaaattaaacacttcttcatcatccaaacc------ac |
318 |
Q |
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| T |
53238889 |
t-----caacagcttagttat---tgaattagtccccc-agctctctc--gctctgaaccctaaaattaaatacttttgcctcatcatcatcgtccaaac |
53238801 |
T |
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| Q |
319 |
ctagtttcattctcactccgatcccgccacttcacggccacaaattcagcactttctcacttttccagctcttcaaggaggtttgtcgatccaacttttt |
418 |
Q |
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| T |
53238800 |
ctagtttcattctcgctccgatcccgccacttcacggccgcaaattcaacaatttcttacttttccagctctttaaggaggtaagtcgatctaac-tttt |
53238702 |
T |
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| Q |
419 |
aatactttttgatgtttt |
436 |
Q |
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| T |
53238701 |
aatactttttgatgtttt |
53238684 |
T |
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