View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_19 (Length: 479)
Name: NF1150_low_19
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_19 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: scaffold0128 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 75 - 441
Target Start/End: Original strand, 11862 - 12230
Alignment:
| Q |
75 |
ggagcagagatgtgatattttgaagttggttaggcaacattttcgtatggttgtgtgttttcaagatactaagtgggagtttattgacgattctgtttgt |
174 |
Q |
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| T |
11862 |
ggagaagagatgtgatattttgaagttggttaggcaacattttcgtatggttgtgtgttttcaagatactaagcgggagtttattgacgattctgtttgt |
11961 |
T |
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| Q |
175 |
gatttttctttgtggggttctaaagaatttggattttcttttcggccttcaatgggcacttctggtggtatcctgaccttatgggatgcctcagaagttg |
274 |
Q |
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| T |
11962 |
gatttttctttgtggggttctaaagagtttggattttcttttcggccttcaatgggcgcttctggtggtatcatgaccttatgggatgcctcggaaattg |
12061 |
T |
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| Q |
275 |
aggtttagcttattaagactatgcttaatgtgctgattattaatgcaaattttttaaaagtggtgatgacttgtt--tattgcgaatgtctatgctccgt |
372 |
Q |
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| T |
12062 |
acgtttagcttattaagactatgcttaatgtgttgaatattaatgcaaatattttaaaagtggtgatgacttctttatattgcgaatgtctatgctccgt |
12161 |
T |
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| Q |
373 |
gtgatgaaagtggtaagacttgtgggttatagtgggggatttgactaattttaattataatggagataa |
441 |
Q |
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| T |
12162 |
gtgatgaaggtggtaagacttgtgggttatagtgggggatttgactaattttaattaatatggagataa |
12230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 87 - 372
Target Start/End: Complemental strand, 22470112 - 22469831
Alignment:
| Q |
87 |
tgatattttgaagttggttaggcaacattttcgtatggttgtgtgttttcaagatactaagtgggagtttattgacgattctgtttgtgatttttctttg |
186 |
Q |
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| T |
22470112 |
tgatattttgaacctagttaggcaacactgtcctatggtagtttgttttcatgagactaagttggagtttatgga--aatttttttgtgctt---ctttg |
22470018 |
T |
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| Q |
187 |
tggggttctaaagaatttggattttcttttcggccttcaatgggcacttctggtggtatcctgaccttatgggatgcctcagaagttgaggtttagctta |
286 |
Q |
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| T |
22470017 |
tggggttctaaggagtttggattttctttttggccttcggtgggggcttctggtggtatcctaaccttatggaatgcctcaaatgtagaggtttagttta |
22469918 |
T |
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| Q |
287 |
ttaagactatgcttaatgtgctgattattaatgcaa-attttttaaaagtggtgatgacttgtttattgcgaatgtctatgctccgt |
372 |
Q |
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| T |
22469917 |
ctaagagtatgtttaatgagctgattattaaaggaagatttatgaaaagtggtgatgagttctttattgctaatgtatgtgctccgt |
22469831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 27225929 - 27225873
Alignment:
| Q |
6 |
acagccatgtaatttgggatcaatacaattagaaaggggtgaatcatctgtggtgct |
62 |
Q |
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| T |
27225929 |
acagccatgtaatttgggatcaatacaattagaaagggttgaatcatttgtggtgct |
27225873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 10674105 - 10674049
Alignment:
| Q |
6 |
acagccatgtaatttgggatcaatacaattagaaaggggtgaatcatctgtggtgct |
62 |
Q |
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| T |
10674105 |
acagccatgtaatttgggatcaatacaattagaaatgggtgaattatttgtggtgct |
10674049 |
T |
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