View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_2 (Length: 949)
Name: NF1150_low_2
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 103 - 797
Target Start/End: Complemental strand, 3436067 - 3435390
Alignment:
| Q |
103 |
atatttttagaacgaaaggcaccatcctcattattatcttgcaaattaaattcttgttcccggaacttgtcctcctccatccattcctccgtcatctcat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3436067 |
atatttttagaacgaaaggcaccatcctcattattatcttgcaaattaaattcttgttcccggaacttgtcctcctccatccattcctccgtcatctcat |
3435968 |
T |
|
| Q |
203 |
tcaccatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatcacaaatcgaagcatcctcaaacaaacaagcatc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3435967 |
tcaccatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatcacaaatcgaagcatcctcaaacaaacaagcatc |
3435868 |
T |
|
| Q |
303 |
ctcgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaatcagcttcgtcattaataacctctagggatgaa |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3435867 |
ctcgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaatcagcttcgtcattaataatctctagggatgaa |
3435768 |
T |
|
| Q |
403 |
gttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaatcgaccaaaatcaaaagcacataatctnnnnn |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3435767 |
gttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcaattatctaccctcaacaatcgaccaaaatcaaaagcacataatctaaaaa |
3435668 |
T |
|
| Q |
503 |
nnnttccattccatgcttgcaaagaaactccataaattcgaatccgtgcacctccttcaaatttttaaaatatatattccaattaaaagatactattcca |
602 |
Q |
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| T |
3435667 |
atttcccattccatgcttgcaaagaaactccgtaaattcgaatccgtgaacctctttcaaat--ttaacaca-atctt---------------tattcca |
3435586 |
T |
|
| Q |
603 |
cgcaatagtatctcttatactctctttaatccaatttttattatcccaaaaataactaatgttgagatttcatttaaaatatatattacgaaatcgtt-t |
701 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
3435585 |
tgcaatagtatctcttatactctctttaatccaatttttattatcccaaaaataactaatgttgagattccatttaaaatatatattacgaaatcgttgt |
3435486 |
T |
|
| Q |
702 |
tgtaaaaagattcgttttggaaatgaagttggctcctttannnnnnnaatgttattaaaaaactaagtaaactttcatttcttagaacacacaaat |
797 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3435485 |
tgtaaaaagattcgttttggaaatgaagttggctcctttatttttttaatgttattaaaaaactaagtaaactttcatctcttagaacacacaaat |
3435390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 884 - 940
Target Start/End: Complemental strand, 3435304 - 3435248
Alignment:
| Q |
884 |
gttcgttaattttctatccccgtgaccaattacaagcattcaccataccccctatga |
940 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3435304 |
gttcgttaattttctatccccgtgaccaattataagcattcaccataccccctatga |
3435248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 171 - 497
Target Start/End: Original strand, 17964044 - 17964370
Alignment:
| Q |
171 |
gtcctcctccatccattcctccgtcatctcattcaccatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatca |
270 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||| || || |||| | || |||| |||| | ||| || |
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| T |
17964044 |
gtcctcctccatccattcctccgacatctcattcaccaaattatctacgtcattattcacaactaagtcaccatgatcctctgcttcttcattatcacca |
17964143 |
T |
|
| Q |
271 |
caaatcgaagcatcctcaaacaaacaagcatcctcgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaat |
370 |
Q |
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||| || | |||||||||| ||||||||||||||||| || | || ||| | ||||| | ||||||||||||| |||| |||||||||||||||||| |
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| T |
17964144 |
caacccggatcatcctcaaataaacaagcatcctcgccgaacggaaaacccaaatcctctacaattttaatattcatcaaagcatcatcaaccaacaaat |
17964243 |
T |
|
| Q |
371 |
cagcttcgtcattaataacctctagggatgaagttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaa |
470 |
Q |
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| || ||| | || |||||||| | ||| |||| || ||||||||||||| | |||||| ||| ||||||| ||||||||| |||| |||| |||| |
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| T |
17964244 |
ctgcgtcggcttttataacctccaaggaagaagctggcaataaaatacgagcgtaatcatacctttctctataaaccgtgcaactatccacccgtaacat |
17964343 |
T |
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| Q |
471 |
tcgaccaaaatcaaaagcacataatct |
497 |
Q |
| |
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||||| ||||||||||||||||||||| |
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| T |
17964344 |
tcgactaaaatcaaaagcacataatct |
17964370 |
T |
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