View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1150_low_20 (Length: 468)

Name: NF1150_low_20
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1150_low_20
NF1150_low_20
[»] chr2 (8 HSPs)
chr2 (9-440)||(38690682-38691121)
chr2 (242-319)||(38634158-38634235)
chr2 (9-57)||(38638060-38638108)
chr2 (123-164)||(37123625-37123666)
chr2 (11-57)||(38634016-38634062)
chr2 (124-161)||(14368415-14368452)
chr2 (123-163)||(34319813-34319853)
chr2 (121-161)||(44287863-44287903)
[»] chr6 (3 HSPs)
chr6 (121-161)||(6922630-6922670)
chr6 (121-162)||(7339566-7339607)
chr6 (124-161)||(12606722-12606759)
[»] chr3 (3 HSPs)
chr3 (124-163)||(51829556-51829595)
chr3 (121-161)||(41259949-41259989)
chr3 (123-161)||(11988929-11988967)
[»] chr1 (1 HSPs)
chr1 (123-161)||(2098817-2098855)
[»] chr8 (2 HSPs)
chr8 (121-161)||(19756424-19756464)
chr8 (121-155)||(8766817-8766851)
[»] chr7 (3 HSPs)
chr7 (121-163)||(45725119-45725161)
chr7 (121-161)||(23198521-23198561)
chr7 (121-161)||(37307731-37307771)
[»] chr4 (2 HSPs)
chr4 (130-164)||(3158556-3158590)
chr4 (121-161)||(50263986-50264026)
[»] scaffold0178 (1 HSPs)
scaffold0178 (125-161)||(9703-9739)


Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 9 - 440
Target Start/End: Original strand, 38690682 - 38691121
Alignment:
Q  9 agcataggaataaggatgaagcatatcaaaggattttcaaattgaaaaatatagtatcatggtgaggtaagatatcaaatcatatcaaagatttcttctt 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38690682 agcataagaataaggatgaagcatatcaaaggattttcaaattgaaaaatatagtatcatggtgaggtaagatatcaaatcatatcaaagatttcttctt 38690781  T
Q  109 ttaatctagtgggcctagtggctagattcacatacattatatgtggagaagtgagatatcccg---gattcgaagcccaaccctgcaaaatctatgcatt 205  Q
    |||||| | | | |||||||||||||||||||||||||||||||||||||||| ||||||||    ||| |||| |||||||||||||||||||||||||    
T  38690782 ttaatccattag-cctagtggctagattcacatacattatatgtggagaagtgggatatccccccagatacgaatcccaaccctgcaaaatctatgcatt 38690880  T
Q  206 ttattatat------gtatattttatatttccatatgtagatcacatgatttatcctttttacgtgtacatatagtccatagctatgaatctatgttaac 299  Q
    |||| ||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38690881 ttatgatatctccatgtatattttatatttccatatgtagatcacatgatttatcctttttacgtgtacatatagtccatagctatgaatctatgttaac 38690980  T
Q  300 ttataaaaaccaattatacaatcaaagactataggtagagaattagaattacccaaatttgcttcaattctttcaaatttaaagttaagtgaaccaatta 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38690981 ttataaaaaccaattatacaatcaaagactataggtagagaattagaattacccaaatttgcttcaattctttcaaatttaaagttaagtgaaccaatta 38691080  T
Q  400 cttgatactccatcattatctatatcttatatgttaatttt 440  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38691081 cttgatactccatcattatctatatcttatatgttaatttt 38691121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 319
Target Start/End: Original strand, 38634158 - 38634235
Alignment:
Q  242 cacatgatttatcctttttacgtgtacatatagtccatagctatgaatctatgttaacttataaaaaccaattataca 319  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||| ||| |||||||||||    
T  38634158 cacatcatttatcctttttacatgtacaaatagtccatagctatgagtctatgttaatttatgaaatccaattataca 38634235  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 38638060 - 38638108
Alignment:
Q  9 agcataggaataaggatgaagcatatcaaaggattttcaaattgaaaaa 57  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  38638060 agcataagaaaaaggatgaagcatatcaaaggattttgaaattgaaaaa 38638108  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 37123666 - 37123625
Alignment:
Q  123 ctagtggctagattcacatacattatatgtggagaagtgaga 164  Q
    |||||||||||||||||| ||||||| |||||||||||||||    
T  37123666 ctagtggctagattcacacacattatgtgtggagaagtgaga 37123625  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 38634016 - 38634062
Alignment:
Q  11 cataggaataaggatgaagcatatcaaaggattttcaaattgaaaaa 57  Q
    |||| ||| |||| ||||||||||||||||||||| |||||||||||    
T  38634016 cataagaaaaagggtgaagcatatcaaaggattttaaaattgaaaaa 38634062  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 14368415 - 14368452
Alignment:
Q  124 tagtggctagattcacatacattatatgtggagaagtg 161  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  14368415 tagtggctagattcacacacattatgtgtggagaagtg 14368452  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 34319813 - 34319853
Alignment:
Q  123 ctagtggctagattcacatacattatatgtggagaagtgag 163  Q
    |||||||||||||||||| ||||||| ||| ||||||||||    
T  34319813 ctagtggctagattcacacacattatgtgtagagaagtgag 34319853  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 44287903 - 44287863
Alignment:
Q  121 gcctagtggctagattcacatacattatatgtggagaagtg 161  Q
    ||||| |||||||||||||| ||||||| ||||||||||||    
T  44287903 gcctattggctagattcacacacattatgtgtggagaagtg 44287863  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 6922630 - 6922670
Alignment:
Q  121 gcctagtggctagattcacatacattatatgtggagaagtg 161  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  6922630 gcctagtggctagattcacacacattatatgtggagaagtg 6922670  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 7339607 - 7339566
Alignment:
Q  121 gcctagtggctagattcacatacattatatgtggagaagtga 162  Q
    |||||||||||||||||||| ||||||| |||| ||||||||    
T  7339607 gcctagtggctagattcacacacattatgtgtgaagaagtga 7339566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 12606759 - 12606722
Alignment:
Q  124 tagtggctagattcacatacattatatgtggagaagtg 161  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  12606759 tagtggctagattcacacacattatatgtgaagaagtg 12606722  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 51829556 - 51829595
Alignment:
Q  124 tagtggctagattcacatacattatatgtggagaagtgag 163  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  51829556 tagtggctagattcacatacattatgtgtggagaagtgag 51829595  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 41259949 - 41259989
Alignment:
Q  121 gcctagtggctagattcacatacattatatgtggagaagtg 161  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  41259949 gcctagtggctagattcacacacattatgtgtggagaagtg 41259989  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 11988929 - 11988967
Alignment:
Q  123 ctagtggctagattcacatacattatatgtggagaagtg 161  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  11988929 ctagtggctagattcacacacattatgtgtggagaagtg 11988967  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 2098855 - 2098817
Alignment:
Q  123 ctagtggctagattcacatacattatatgtggagaagtg 161  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  2098855 ctagtggctagattcacacacattatatgtggagaagtg 2098817  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 19756424 - 19756464
Alignment:
Q  121 gcctagtggctagattcacatacattatatgtggagaagtg 161  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  19756424 gcctagtggctagattcacacacattatgtgtggagaagtg 19756464  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 8766817 - 8766851
Alignment:
Q  121 gcctagtggctagattcacatacattatatgtgga 155  Q
    |||||||||||||||||||||||||||| ||||||    
T  8766817 gcctagtggctagattcacatacattatttgtgga 8766851  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 45725119 - 45725161
Alignment:
Q  121 gcctagtggctagattcacatacattatatgtggagaagtgag 163  Q
    |||||||||||||||| ||||||||||| ||| ||||||||||    
T  45725119 gcctagtggctagatttacatacattatgtgtagagaagtgag 45725161  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 23198521 - 23198561
Alignment:
Q  121 gcctagtggctagattcacatacattatatgtggagaagtg 161  Q
    |||||||||||||||| ||| ||||||| ||||||||||||    
T  23198521 gcctagtggctagatttacacacattatgtgtggagaagtg 23198561  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 37307771 - 37307731
Alignment:
Q  121 gcctagtggctagattcacatacattatatgtggagaagtg 161  Q
    |||||||||||||||||| | ||||||| ||||||||||||    
T  37307771 gcctagtggctagattcaaacacattatttgtggagaagtg 37307731  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 3158556 - 3158590
Alignment:
Q  130 ctagattcacatacattatatgtggagaagtgaga 164  Q
    ||||||||||||||||||||| |||||||||||||    
T  3158556 ctagattcacatacattatatatggagaagtgaga 3158590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 50263986 - 50264026
Alignment:
Q  121 gcctagtggctagattcacatacattatatgtggagaagtg 161  Q
    |||||||||||||||||||| |||| || ||||||||||||    
T  50263986 gcctagtggctagattcacacacatcatgtgtggagaagtg 50264026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 9703 - 9739
Alignment:
Q  125 agtggctagattcacatacattatatgtggagaagtg 161  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  9703 agtggctagattcacacacattatgtgtggagaagtg 9739  T

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