View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1150_low_21 (Length: 466)
Name: NF1150_low_21
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 7542525 - 7542070
Alignment:
| Q |
1 |
tttcctgtgtgacagtcacgtgtgctttgttaccctcatgtcactttctcaggaaaatctcaaccaatccaattttaagtgctaatgtgcaagtataaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
7542525 |
tttcctgtgtgacagtcacgtgtgcttcgttaccctcttgtcactttctcaggaaaatctcaaccaatccaattttaagtgctcatgtgcaagtacaaag |
7542426 |
T |
|
| Q |
101 |
ctaacccatttcacaagtttctaactttcaactaaccaacaatcaagtttcacnnnnnnnnactctgcaaccatagccattgcatttgttcattgttgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7542425 |
ctaacccatttcacaagtttctaactttcaactaaccaacaatcaagtttcacttttttt-actctgcaaccatagccattgcatttgttcattgttgta |
7542327 |
T |
|
| Q |
201 |
gaaatttcaaatggatggtgaatacaactcttcttcagtgtccttaacatcaaaacctttgatgtgtcccaagtcaccacttccagggtttgtggatttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7542326 |
gaaatttcaaatggatggtgaatacaactcttctacagtgtccttaacatcgaaacctttgatgtgtcccaagtcaccacttccagggtttgtggatttt |
7542227 |
T |
|
| Q |
301 |
catggaaagaggaagcagatggttaagattcaagttttggagaaagaaattggtttgcttcaggtatgcatgtctaattgattggtttctctttcccatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7542226 |
catggaaagaggaagcagatggttaagattcaagttttggagaaagaaattggtttgcttcaggtatgcatgtctaattgattggtttctctttcccatt |
7542127 |
T |
|
| Q |
401 |
tgctatccaaagtgcttattttttgagctaatttgagaaagatacatcaagaattat |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7542126 |
tgctatccaaagtgcttattttttgagctaatttgagaaagatacatcaagcattat |
7542070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University