View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1150_low_26 (Length: 453)

Name: NF1150_low_26
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1150_low_26
NF1150_low_26
[»] chr6 (16 HSPs)
chr6 (70-372)||(33414568-33414869)
chr6 (69-352)||(33258215-33258498)
chr6 (176-372)||(33269541-33269740)
chr6 (152-349)||(31564921-31565117)
chr6 (90-372)||(33395052-33395335)
chr6 (87-253)||(33293092-33293258)
chr6 (90-321)||(33278972-33279198)
chr6 (259-358)||(33384043-33384141)
chr6 (87-197)||(28872981-28873091)
chr6 (1-66)||(33258817-33258882)
chr6 (194-327)||(33406916-33407049)
chr6 (194-318)||(33280358-33280482)
chr6 (70-139)||(33384166-33384235)
chr6 (314-358)||(33293035-33293078)
chr6 (194-297)||(33395858-33395961)
chr6 (21-66)||(24633531-24633576)
[»] chr2 (2 HSPs)
chr2 (87-372)||(17447696-17447981)
chr2 (119-300)||(17445421-17445606)
[»] scaffold0428 (4 HSPs)
scaffold0428 (69-352)||(2336-2619)
scaffold0428 (90-321)||(15055-15281)
scaffold0428 (1-66)||(2938-3003)
scaffold0428 (194-318)||(13771-13895)


Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 70 - 372
Target Start/End: Complemental strand, 33414869 - 33414568
Alignment:
Q  70 tttggtcaagcaactacgagaagaaaccggtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcatac 169  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||| |||||||||||||||||     
T  33414869 tttggtcaagcaactacgagaagaaactggtgcagggatgatggactgtaagaaagctcttgctgaaacggaaggcgatcttgaaaaggcgcaagcatat 33414770  T
Q  170 ctcaggaaaaagggtctctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttc 269  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||| || |||||||    
T  33414769 ctcaggaaaaagggtctctcatccgctgataagaaatccggaagactagcagctgaaggaagaatcggtacatacattcacgatgcacgtattggtgttc 33414670  T
Q  270 taattgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaaggagtttggttgatgatcttgcaatgcaagttgctgcatgtccacagg 369  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  33414669 taattgaagtgaactgtgaaacggactttgttggcagaagtgagaaattcaaggag-ttggttgatgatcttgcaatgcaagttgctgcttgtccacagg 33414571  T
Q  370 ttc 372  Q
    |||    
T  33414570 ttc 33414568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 69 - 352
Target Start/End: Complemental strand, 33258498 - 33258215
Alignment:
Q  69 ttttggtcaagcaactacgagaagaaaccggtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcata 168  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| |||| |||||| ||||| |||||| ||||||||||    
T  33258498 ttttggttaagcaactgcgagaagaaaccggtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcata 33258399  T
Q  169 cctcaggaaaaagggtctctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacata-cattcacgatgaacgcatcggtgt 267  Q
     ||||  |||||||||||||||||||||||||||||||| |  ||||||||||  |||| ||||||||||||||| || || ||||  || ||| |||||    
T  33258398 tctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgt 33258299  T
Q  268 tctaattgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaaggagtttggttgatgatcttgcaatgcaagt 352  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  33258298 tctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggag-ttggttgacgatcttgcaatgcaagt 33258215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 176 - 372
Target Start/End: Complemental strand, 33269740 - 33269541
Alignment:
Q  176 aaaaagggtctctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacata----cattcacgatgaacgcatcggtgttcta 271  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    ||||||| ||| | ||||||||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  272 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaaggagtttggttgatgatcttgcaatgcaagttgctgcatgtccacaggtt 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaag-ttggttgatgatcttgcaatgcaagttgctgcttgtccacaggtt 33269542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 152 - 349
Target Start/End: Original strand, 31564921 - 31565117
Alignment:
Q  152 gaaaaggcgcaagcatacctcaggaaaaagggtctctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacg 251  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||| ||  ||||||| |||||||||||||||||||||||    
T  31564921 gaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacg 31565020  T
Q  252 atgaacgcatcggtgttctaattgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaaggagtttggttgatgatcttgcaatgca 349  Q
    ||  ||||||  ||||||||||||||||||| |||||||| |||||| | || ||||||||||||||||||||| |||||| ||||||||||||||||    
T  31565021 attcacgcattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggag-ttggttcatgatcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 90 - 372
Target Start/End: Complemental strand, 33395335 - 33395052
Alignment:
Q  90 aagaaaccggtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcatacctcaggaaaaagggtctctc 189  Q
    |||||||  |||| ||||| |||||||||||||||||  | || ||||   |||| ||||| |||||||| ||| ||||||| || | ||||||||||||    
T  33395335 aagaaacaagtgctgggattatggactgtaagaaagccttagccgaaactaaaggtgatcttgaaaaggcccaatcataccttagaacaaagggtctctc 33395236  T
Q  190 atccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaa 289  Q
    ||| ||||| |||||||| |  || ||||||||||||| ||||||||||| ||||||| |||||| |||||||  |||||| ||||||||||||||||||    
T  33395235 atcagctgacaagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgacgatgcacgcatctatgttctgattgaagtgaactgtgaa 33395136  T
Q  290 accgactttgttgg--cagaagtgagaaattcaaggagtttggttgatgatcttgcaatgcaagttgctgcatgtccacaggttc 372  Q
    ||||||||||||||  ||||||||| | |||||||||| ||||||| ||||||| ||||||||   ||||| |||||||||||||    
T  33395135 accgactttgttggcacagaagtgatagattcaaggag-ttggttgctgatctttcaatgcaataggctgcttgtccacaggttc 33395052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 87 - 253
Target Start/End: Complemental strand, 33293258 - 33293092
Alignment:
Q  87 gagaagaaaccggtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcatacctcaggaaaaagggtct 186  Q
    |||||||||||||||| ||||||||||||||||||||||| | |||||||| |||||| ||||| ||||||| | ||||||||||||| |||||||||||    
T  33293258 gagaagaaaccggtgctgggatgatggactgtaagaaagctcatgctgaaacagaaggtgatcttgaaaaggtgaaagcatacctcagaaaaaagggtct 33293159  T
Q  187 ctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgat 253  Q
    ||||| |||||||||||||||   ||||||||||||||||| |||||| ||||||||||||||||||    
T  33293158 ctcattcgctgataagaaatccagaagactagcagctgaaggaagaattggtacatacattcacgat 33293092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 90 - 321
Target Start/End: Complemental strand, 33279198 - 33278972
Alignment:
Q  90 aagaaaccggtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcatacctcaggaaaaagggtctctc 189  Q
    ||||||||||||| |||| |||||||||||| || || ||||| ||||  |||||  |||  |||||||||||||||||||| || |||||||||||||     
T  33279198 aagaaaccggtgctgggacgatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag-aaaaagggtctctt 33279100  T
Q  190 atccgctgataagaaatctg-caagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtga 288  Q
    ||| ||||| |||||||| | |||| |||    || ||| |||||| ||||||||||||||||||  || |||| |||||||||||||||| ||||||||    
T  33279099 atcagctgacaagaaatccggcaag-cta----ctaaaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtga 33279005  T
Q  289 aaccgactttgttggcagaagtgagaaattcaa 321  Q
    ||||||||||| |||||||||| ||||||||||    
T  33279004 aaccgactttgatggcagaagttagaaattcaa 33278972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 259 - 358
Target Start/End: Complemental strand, 33384141 - 33384043
Alignment:
Q  259 catcggtgttctaattgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaaggagtttggttgatgatcttgcaatgcaagttgctgc 358  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | |||||| |||||||||||||||||||||||||| |||||    
T  33384141 catcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggag-ttggttgatgatcttgcaatgcaagtggctgc 33384043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 28872981 - 28873091
Alignment:
Q  87 gagaagaaaccggtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcatacctcaggaaaaagggtct 186  Q
    |||||||||||||| |  |||||||||||||||||||||| ||||| |||| |||||| ||||| ||||||||| |||||||||||||  ||||||||||    
T  28872981 gagaagaaaccggttccaggatgatggactgtaagaaagcccttgccgaaacagaaggtgatcttgaaaaggcgtaagcatacctcagataaaagggtct 28873080  T
Q  187 ctcatccgctg 197  Q
    |||||| ||||    
T  28873081 ctcatctgctg 28873091  T

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Target: chr6; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33258882 - 33258817
Alignment:
Q  1 tattctttttcattcacttcaaatttattataggcaccagaactacaagctttatcaggttgctaa 66  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||    
T  33258882 tattctttttcattcacttcaaatttattaaaggcaccagaacttcaagctttatcagggtgctaa 33258817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 327
Target Start/End: Complemental strand, 33407049 - 33406916
Alignment:
Q  194 gctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccg 293  Q
    ||||||||||||||   |||||||||||| || | || || ||||||||| ||| || ||  | ||||  ||||| |||||| |||||||| ||||||||    
T  33407049 gctgataagaaatccagaagactagcagccgatggaaaaaccggtacatatattgacaatttatgcattagtgttataattgtagtgaactatgaaaccg 33406950  T
Q  294 actttgttggcagaagtgagaaattcaaggagtt 327  Q
    |||||||||||||||||||| ||||| |||||||    
T  33406949 actttgttggcagaagtgagcaattcgaggagtt 33406916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 194 - 318
Target Start/End: Complemental strand, 33280482 - 33280358
Alignment:
Q  194 gctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccg 293  Q
    ||||| |||||||| | |||| ||  |||||||| | ||||| |||| ||||||||||||  |||||| ||| ||||| ||||||| |||||||| || |    
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 33280383  T
Q  294 actttgttggcagaagtgagaaatt 318  Q
    ||||| |||||||||||||||||||    
T  33280382 acttttttggcagaagtgagaaatt 33280358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 33384235 - 33384166
Alignment:
Q  70 tttggtcaagcaactacgagaagaaaccggtgcagggatgatggactgtaagaaagcacttgctgaaaaa 139  Q
    |||||| |||||||| | ||||||||| ||||||| ||||||||||||||||||||  ||||||||||||    
T  33384235 tttggttaagcaactgcaagaagaaacaggtgcagagatgatggactgtaagaaagttcttgctgaaaaa 33384166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 33293078 - 33293035
Alignment:
Q  314 aaattcaaggagtttggttgatgatcttgcaatgcaagttgctgc 358  Q
    |||||||||||||| |||| |||||||||||||||||||||||||    
T  33293078 aaattcaaggagtt-ggttaatgatcttgcaatgcaagttgctgc 33293035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 297
Target Start/End: Complemental strand, 33395961 - 33395858
Alignment:
Q  194 gctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccg 293  Q
    ||||||||||||||   ||||||| |||| |||| || || ||||||||| |||||| ||  | ||||  |||||||| ||||| |||||| ||||||||    
T  33395961 gctgataagaaatcgagaagactaacagccgaaggaaaaaccggtacataaattcacaattcatgcattagtgttctagttgaattgaactatgaaaccg 33395862  T
Q  294 actt 297  Q
    ||||    
T  33395861 actt 33395858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 24633531 - 24633576
Alignment:
Q  21 aaatttattataggcaccagaactacaagctttatcaggttgctaa 66  Q
    |||| ||||| |||||||||||||||||||||||| ||| ||||||    
T  24633531 aaatatattaaaggcaccagaactacaagctttattagggtgctaa 24633576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 87 - 372
Target Start/End: Original strand, 17447696 - 17447981
Alignment:
Q  87 gagaagaaaccggtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcatacctcaggaaaaaggg-tc 185  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||| ||||  ||||| ||||| ||||||||||||||||||||||| |||||||| ||    
T  17447696 gagaagaaaccggtgctgggattatggactgtaagaaagcccttgccgaaactgaaggtgatcttgaaaaggcgcaagcatacctcagaaaaaaggggtc 17447795  T
Q  186 tctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactg 285  Q
    |||||||||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||     
T  17447796 tctcatccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactt 17447895  T
Q  286 tgaaaccgactttgttggcagaagtgagaaattcaaggagtttggttgatgatcttgcaatgcaagttgctgcatgtccacaggttc 372  Q
    |||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||    
T  17447896 tgaaaccgactttgttggcagaagggagagattcaaggag-ttggttgatgatcttgcaatgcaagtggctgcttttccacaggttc 17447981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 300
Target Start/End: Original strand, 17445421 - 17445606
Alignment:
Q  119 aagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcata----cctcaggaaaaagggtctctcatccgctgataagaaatctgcaaga 214  Q
    ||||||||  |||||||||  ||||| ||||| |||||||| ||||||||    ||| || ||||| | ||||||||| ||||  || ||||| |  ||     
T  17445421 aagaaagccattgctgaaactgaaggtgatcttgaaaaggctcaagcatatataccttagtaaaaaagctctctcatcagctggcaataaatccggcagg 17445520  T
Q  215 ctagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccgactttgt 300  Q
    |||||| |||||  || ||||||||||| |||||| ||   | ||| ||||||||||||||||| ||||||||||||| |||||||    
T  17445521 ctagcaactgaaagaaaaatcggtacattcattcatgactcatgcaacggtgttctaattgaagggaactgtgaaaccaactttgt 17445606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 69 - 352
Target Start/End: Complemental strand, 2619 - 2336
Alignment:
Q  69 ttttggtcaagcaactacgagaagaaaccggtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcata 168  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| |||| |||||| ||||| |||||| ||||||||||    
T  2619 ttttggttaagcaactgcgagaagaaaccggtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcata 2520  T
Q  169 cctcaggaaaaagggtctctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacata-cattcacgatgaacgcatcggtgt 267  Q
     ||||  |||||||||||||||||||||||||||||||| |  ||||||||||  |||| ||||||||||||||| || || ||||  || ||| |||||    
T  2519 tctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgt 2420  T
Q  268 tctaattgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaaggagtttggttgatgatcttgcaatgcaagt 352  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  2419 tctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggag-ttggttgacgatcttgcaatgcaagt 2336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 90 - 321
Target Start/End: Original strand, 15055 - 15281
Alignment:
Q  90 aagaaaccggtgcagggatgatggactgtaagaaagcacttgctgaaaaagaaggcgatctcgaaaaggcgcaagcatacctcaggaaaaagggtctctc 189  Q
    ||||||||||||| |||| |||||||||||| || || ||||| ||||  |||||  |||  |||||||||||||||||||| || |||||||||||||     
T  15055 aagaaaccggtgctgggacgatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag-aaaaagggtctctt 15153  T
Q  190 atccgctgataagaaatctg-caagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtga 288  Q
    ||| ||||| |||||||| | |||| |||    || ||| |||||| ||||||||||||||||||  || |||| |||||||||||||||| ||||||||    
T  15154 atcagctgacaagaaatccggcaag-cta----ctaaaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtga 15248  T
Q  289 aaccgactttgttggcagaagtgagaaattcaa 321  Q
    ||||||||||| |||||||||| ||||||||||    
T  15249 aaccgactttgatggcagaagttagaaattcaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3003 - 2938
Alignment:
Q  1 tattctttttcattcacttcaaatttattataggcaccagaactacaagctttatcaggttgctaa 66  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||    
T  3003 tattctttttcattcacttcaaatttattaaaggcaccagaacttcaagctttatcagggtgctaa 2938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 194 - 318
Target Start/End: Original strand, 13771 - 13895
Alignment:
Q  194 gctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccg 293  Q
    ||||| |||||||| | |||| ||  |||||||| | ||||| |||| ||||||||||||  |||||| ||| ||||| ||||||| |||||||| || |    
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 13870  T
Q  294 actttgttggcagaagtgagaaatt 318  Q
    ||||| |||||||||||||||||||    
T  13871 acttttttggcagaagtgagaaatt 13895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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