View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_27 (Length: 453)
Name: NF1150_low_27
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 12933078 - 12933477
Alignment:
| Q |
1 |
aaacttgatgataaagccattccttgcatatttgtgggctatggagatgaggaatttggctataggttatgggatccagagaagagaagaattattagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12933078 |
aaacttgatgataaagccattccttgcatatttgtgggctatggagatgaggaatttggctataggttatgggatccagagaagagaagaattattagaa |
12933177 |
T |
|
| Q |
101 |
gcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccacccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12933178 |
gcagagatgtagtgtttcatgagcaagaaactatgtcagattctactattctagaaacacctaaacgttatggtaaggttgatcttacacttaccactcc |
12933277 |
T |
|
| Q |
201 |
tcctgtaagagttgctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggat |
300 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12933278 |
tcctgtaagagttgccacagaagggggagatcttgatgaagaccctggggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaagat |
12933377 |
T |
|
| Q |
301 |
ggagagcaatccccaacatctcagctcaggagatcaagcagagatcatca------taccaggtaccctagttcggagtacatcctcatcactgatgagg |
394 |
Q |
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|
|||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12933378 |
ggagagcaatccacaacatctcatctcaggagatcaagcagagatcatcatccatctaccaggtaccctagttcggagtacatcctcatcactgatgagg |
12933477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 14176348 - 14176747
Alignment:
| Q |
1 |
aaacttgatgataaagccattccttgcatatttgtgggctatggagatgaggaatttggctataggttatgggatccagagaagagaagaattattagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
14176348 |
aaacttgatgataaagccattccttgcatatttgtgggctatggagatgaggaatttggctacaggttatgggatccagagaagagaagaattattagaa |
14176447 |
T |
|
| Q |
101 |
gcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccacccc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
14176448 |
gcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccactcc |
14176547 |
T |
|
| Q |
201 |
tcctgtaagagttgctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggat |
300 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
14176548 |
tcctgtaagagttgccacagaagggggagatcttgatgaagaccctggggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaagat |
14176647 |
T |
|
| Q |
301 |
ggagagcaatccccaacatctcagctcaggagatcaagcagagatcatca------taccaggtaccctagttcggagtacatcctcatcactgatgagg |
394 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14176648 |
ggagagcaatccacaacatctcatctcaggagatcaagcagagatcatcatccatctaccaggtaccctagttcggagtacatcctcatcactgatgagg |
14176747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 28609528 - 28609129
Alignment:
| Q |
1 |
aaacttgatgataaagccattccttgcatatttgtgggctatggagatgaggaatttggctataggttatgggatccagagaagagaagaattattagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
28609528 |
aaacttgatgataaagccattccttgcatatttgtgggctatggagatgaggaatttggctacaggttatgggatccagagaagagaagaattattagaa |
28609429 |
T |
|
| Q |
101 |
gcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccacccc |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
28609428 |
gcagagatgtagtgtttcataagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccactcc |
28609329 |
T |
|
| Q |
201 |
tcctgtaagagttgctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggat |
300 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
28609328 |
tcctgtaagagttgccacagaagggggagatcttgatgaagaccctggggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaagat |
28609229 |
T |
|
| Q |
301 |
ggagagcaatccccaacatctcagctcaggagatcaagcagagatcatca------taccaggtaccctagttcggagtacatcctcatcactgatgagg |
394 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28609228 |
ggagagcaatccacaacatctcatctcaggagattaagcagagatcatcatccatctaccaggtaccctagttcggagtacatcctcatcactgatgagg |
28609129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 15298868 - 15299267
Alignment:
| Q |
1 |
aaacttgatgataaagccattccttgcatatttgtgggctatggagatgaggaatttggctataggttatgggatccagagaagagaagaattattagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
15298868 |
aaacttgatgataaagccattccttgcatatgtgcgggctatggagatgaggaatttggctacaggttatgggatccagagaagagaagaattattagaa |
15298967 |
T |
|
| Q |
101 |
gcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccacccc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| || |
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|
| T |
15298968 |
gcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattccagaaacacctaaacgttatggtaaggttgatcttacagttaccactcc |
15299067 |
T |
|
| Q |
201 |
tcctgtaagagttgctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggat |
300 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |
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|
| T |
15299068 |
tcctgtaagagttgccacagaagggggagatcttgatgaagaccctggggttaatggtgagttagtagttgaagatggtgatgaggaagatgttcaggat |
15299167 |
T |
|
| Q |
301 |
ggagagcaatccccaacatctcagctcaggagatcaagcagagatcatca------taccaggtaccctagttcggagtacatcctcatcactgatgagg |
394 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||| |
|
|
| T |
15299168 |
ggagagcaatgcccaacatctcagctcaagagatcaagcagagatcatcatccatctaccaggtaccctagtttggagtacattctcatcactgttgagg |
15299267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 38995187 - 38994875
Alignment:
| Q |
1 |
aaacttgatgataaagccattccttgcatatttgtgggctatggagatgaggaatttggctataggttatgggatccagag-aagagaagaattattaga |
99 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | ||||||||||||| | ||||||||||| |||||| |
|
|
| T |
38995187 |
aaacttgatgataaagccattccttgtatatttgtggggtatggagatgaggaatttggctgcacgttatgggatccaaaataagagaagaatcattaga |
38995088 |
T |
|
| Q |
100 |
agcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccaccc |
199 |
Q |
| |
|
|| | ||| ||| ||||||||||||||||||||||| || ||| | |||||| ||||||||||| | |||||||||||| |||||||| ||||| | |
|
|
| T |
38995087 |
agtaaagacgtattgtttcatgagcaagaaactatgacaaatt-tactattcctgaaacacctaagcacggtggtaaggttgaccttacactaaccactc |
38994989 |
T |
|
| Q |
200 |
ctcctgtaagagttgctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcagga |
299 |
Q |
| |
|
||||| |||||||||| | |||||||||| |||||||| || ||||||||||||||||||||||| | |||||||||||||||| ||| | | |||| |
|
|
| T |
38994988 |
ctcctataagagttgccaaagaagggggagatcttgattaaaaccctagggttgatggtgagccaacaattgaagatggtgatgacgaaaaaggatagga |
38994889 |
T |
|
| Q |
300 |
tggagagcaatccc |
313 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38994888 |
tggagagcaatccc |
38994875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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