View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_30 (Length: 443)
Name: NF1150_low_30
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 30 - 434
Target Start/End: Original strand, 38843236 - 38843641
Alignment:
| Q |
30 |
agcataactcctcgtttgttaaactcagaagcatattgagccatcttaccaagctcagtggtacaaactggggtgaaatcacctggatgagagaagagaa |
129 |
Q |
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| T |
38843236 |
agcataactcctcgtttgttaaactcagaagcatattgagccatcttaccaagctcagtggtacaaactggggtgaaatcacctggatgagagaagagaa |
38843335 |
T |
|
| Q |
130 |
tggtccatgaatcagaacagaagtgatggagtttgatcttgccttgggtggtatcaacttcaaggtcaggaatagtgtctccaatagtaaggcctggcat |
229 |
Q |
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| T |
38843336 |
tggtccatgaatcagaacagaagtgatggagtttgatcttgccttgggtggtatcaacttcaaggtcaggaatagtgtctccaatagtaaggcctggcat |
38843435 |
T |
|
| Q |
230 |
attcaatgcaaaaagagattactagttttgtgatgaatgagaatgtgtgatgtggttataaattatataaatagaggacagagttgattgcatgaagaga |
329 |
Q |
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| T |
38843436 |
attcaatgcaaacagagattactagttttgtgatgaatgagaatgtgtgatgtggttataa---atataaatagaggacagagttgattgcatgaagaga |
38843532 |
T |
|
| Q |
330 |
acgtggcaagttagtggtgtatgaacgtgtgacattgatgttgcttacatagttatatcaactcccacgt----atacttcctactttattttttacctt |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
38843533 |
acgtggcaagttagtggtgtatgaacgtgtgacattgatgttgcttacatagttatatcaactcccacgtatacatacttcctagtttattttttacctt |
38843632 |
T |
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| Q |
426 |
tgttcatct |
434 |
Q |
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| T |
38843633 |
tgttcatct |
38843641 |
T |
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