View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1150_low_31 (Length: 438)
Name: NF1150_low_31
Description: NF1150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1150_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 190 - 408
Target Start/End: Original strand, 36956064 - 36956282
Alignment:
| Q |
190 |
cctcacaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgca |
289 |
Q |
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| T |
36956064 |
cctcacaattgtttcaacacttataatcacagcatcagtagcagcatgtttagctgttccaggtgaagcagaaggaaaagcacacaatctatgtcatgca |
36956163 |
T |
|
| Q |
290 |
atgtttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgc |
389 |
Q |
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| T |
36956164 |
atgttccatgttttcattatcttcatcacaatatcattgttcagttcaattagtgctaccatcatactcttttgggcaacacttggattaactgaattgg |
36956263 |
T |
|
| Q |
390 |
tgacttttactctcaaaat |
408 |
Q |
| |
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| ||||||||||||||||| |
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| T |
36956264 |
taacttttactctcaaaat |
36956282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 194 - 409
Target Start/End: Original strand, 36935214 - 36935429
Alignment:
| Q |
194 |
acaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaatgt |
293 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||| || |||||| ||||| |||||||||||||||||||||| |||||| |||||| |
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| T |
36935214 |
acaattgtttcaacacttataatcactgcttcagtagcagcatgtttagccgttccatgtgaagcagaaggaaaagcacacaatctatgtcatacaatgt |
36935313 |
T |
|
| Q |
294 |
ttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgctgac |
393 |
Q |
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|||| || |||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
36935314 |
ttcatgctttcattatcttcatcacagtatcattgttcagttccattagtgctaccatcatactcttttgggcaacatttgggttaactgaattgctgac |
36935413 |
T |
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| Q |
394 |
ttttactctcaaaatc |
409 |
Q |
| |
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||| ||||||||||| |
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| T |
36935414 |
tttacctctcaaaatc |
36935429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 200 - 388
Target Start/End: Original strand, 36947998 - 36948186
Alignment:
| Q |
200 |
gtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaatgtttcaag |
299 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| || ||||||||||||||||||| |
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| T |
36947998 |
gtttcaacccttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagcaaacaacctatgtcatgcaatgtttcaag |
36948097 |
T |
|
| Q |
300 |
cattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattg |
388 |
Q |
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| T |
36948098 |
cattcattatcttcatcacaatatcattattcagttccattagttctattatcatactcttttgggcaacacttggattaactgaattg |
36948186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 191 - 396
Target Start/End: Complemental strand, 37069970 - 37069765
Alignment:
| Q |
191 |
ctcacaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaa |
290 |
Q |
| |
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|||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | || ||||||||| |||| || |||||||||| |
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| T |
37069970 |
ctcacattggtttcaacacttataatcactgcttcagtagcagcatgttttgctgttccaggtgaagcggatggaaaagcaaacaacctatgtcatgcaa |
37069871 |
T |
|
| Q |
291 |
tgtttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgct |
390 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||| || ||||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||| | |
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| T |
37069870 |
tgttccaagctttcattatcttcatcacaatatcattgttcagttccattagttctactatcatactctttttggcaaaacttggattaactgaattggt |
37069771 |
T |
|
| Q |
391 |
gacttt |
396 |
Q |
| |
|
|||||| |
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|
| T |
37069770 |
gacttt |
37069765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 191 - 396
Target Start/End: Complemental strand, 37079730 - 37079525
Alignment:
| Q |
191 |
ctcacaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaa |
290 |
Q |
| |
|
|||||| | |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| | || ||||||||| |||| || |||||||||| |
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| T |
37079730 |
ctcacattggtttcaacccttataatcactgcttcagtagcagcatgttttgctgttccaggtgaagcggatggaaaagcaaacaacctatgtcatgcaa |
37079631 |
T |
|
| Q |
291 |
tgtttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgct |
390 |
Q |
| |
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|||| || | |||||||| ||||||||||||||||| || ||||||||||| |||| ||||||||||||||||||| |||||| || |||||||| | |
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| T |
37079630 |
tgttccatgttttcattatattcatcacaatatcattgttcagttccattagttctactatcatactcttttgggcaaagcttggaatacctgaattggt |
37079531 |
T |
|
| Q |
391 |
gacttt |
396 |
Q |
| |
|
|||||| |
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|
| T |
37079530 |
gacttt |
37079525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 36971668 - 36971718
Alignment:
| Q |
200 |
gtttcaacacttataatcacagcatcagtagcagcatgttttgctgttcca |
250 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
36971668 |
gtttcaacacttataatcactgcatcagtagcagcatgttttggtgttcca |
36971718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 194 - 408
Target Start/End: Complemental strand, 12493756 - 12493542
Alignment:
| Q |
194 |
acaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgttccaggtgaatcagaaggaaaagcacacaatctttgtcatgcaatgt |
293 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||||||||||||||||| || ||||||||||||| |
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| T |
12493756 |
acaattgtttcaacacttataatcactgcttcagtagcagcatgtttagctgttccaggtgaagcagaaggaaaagcacacagcctatgtcatgcaatgt |
12493657 |
T |
|
| Q |
294 |
ttcaagcattcattatcttcatcacaatatcattcttttgttccattagtgctaccatcatactcttttgggcaacacttggattaactgaattgctgac |
393 |
Q |
| |
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| || || ||||||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | || |
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| T |
12493656 |
tccatgctttcattatcttcatcacaatatcgttgttcagttccattagtgctactatcatactcttttgggcaacacttgggttaactgaattggtaac |
12493557 |
T |
|
| Q |
394 |
ttttactctcaaaat |
408 |
Q |
| |
|
||||||||||||||| |
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|
| T |
12493556 |
ttttactctcaaaat |
12493542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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